Raf Winand

Affiliations

Transversal Activities in Applied Genomics, Sciensano, Brussels, Belgium.

Publications (11)

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center:

Frontiers in microbiology

Avec: Bert Bogaerts , Raf Winand , Qiang Fu , Julien Van Braekel , Pieter-Jan Ceyssens , Wesley Mattheus , Sophie Bertrand , Sigrid C J De Keersmaecker , Nancy H C Roosens , Kevin Vanneste

Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case.

Food chemistry

Avec: Marie Deckers , Kevin Vanneste , Raf Winand , Sigrid C J De Keersmaecker , Sarah Denayer , Marc Heyndrickx , Dieter Deforce , Marie-Alice Fraiture , Nancy H C Roosens

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing

Microbial genomics

Avec: Bert Bogaerts , Stéphanie Nouws , Bavo Verhaegen , Sarah Denayer , Julien Van Braekel , Raf Winand , Qiang Fu , Florence Crombé , Denis Piérard , Kathleen Marchal , Nancy H C Roosens , Sigrid C J De Keersmaecker , Kevin Vanneste

Concentrations and distribution of chlorinated paraffins in Belgian foods.

Environmental pollution (Barking, Essex : 1987)

Avec: Thomas J McGrath , Franck Limonier , Giulia Poma , Jasper Bombeke , Raf Winand , Kevin Vanneste , Mirjana Andjelkovic , Els Van Hoeck , Laure Joly , Adrian Covaci

TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIES.

International journal of molecular sciences

Avec: Raf Winand , Bert Bogaerts , Stefan Hoffman , Loïc Lefevre , Maud Delvoye , Julien Van Braekel , Qiang Fu , Nancy Hc Roosens , Sigrid Cj De Keersmaecker , Kevin Vanneste

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus.

Scientific reports

Avec: Bas Berbers , Assia Saltykova , Cristina Garcia-Graells , Patrick Philipp , Fabrice Arella , Kathleen Marchal , Raf Winand , Kevin Vanneste , Nancy H C Roosens , Sigrid C J De Keersmaecker

Whole-genome-based phylogenomic analysis of the Belgian 2016-2017 influenza A(H3N2) outbreak season allows improved surveillance.

Microbial genomics

Avec: Laura A E Van Poelvoorde , Bert Bogaerts , Qiang Fu , Sigrid C J De Keersmaecker , Isabelle Thomas , Nina Van Goethem , Steven Van Gucht , Raf Winand , Xavier Saelens , Nancy Roosens , Kevin Vanneste

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and

Journal of clinical microbiology

Avec: Bert Bogaerts , Thomas Delcourt , Karine Soetaert , Samira Boarbi , Pieter-Jan Ceyssens , Raf Winand , Julien Van Braekel , Sigrid C J De Keersmaecker , Nancy H C Roosens , Kathleen Marchal , Vanessa Mathys , Kevin Vanneste

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.

Microorganisms

Avec: Bert Bogaerts , Raf Winand , Julien Van Braekel , Wesley Mattheus , Sigrid C J De Keersmaecker , Nancy H C Roosens , Kathleen Marchal , Kevin Vanneste , Pieter-Jan Ceyssens

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing.

Scientific reports

Avec: Marie-Alice Fraiture , Bert Bogaerts , Raf Winand , Marie Deckers , Nina Papazova , Kevin Vanneste , Sigrid C J De Keersmaecker , Nancy H C Roosens

Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples.

Journal of virological methods

Avec: Steven Van Borm , Qiang Fu , Raf Winand , Kevin Vanneste , Mikhayil Hakhverdyan , Dirk Höper , Frank Vandenbussche

Réseau de co-auteurs

Kevin Vanneste 11 collaborations

Sigrid C J De Keersmaecker 8 collaborations

Bert Bogaerts 7 collaborations

Nancy H C Roosens 7 collaborations

Qiang Fu 5 collaborations

Julien Van Braekel 5 collaborations

Kathleen Marchal 4 collaborations

Pieter-Jan Ceyssens 3 collaborations

Wesley Mattheus 2 collaborations

Marie Deckers 2 collaborations

Sarah Denayer 2 collaborations

Marie-Alice Fraiture 2 collaborations

Sophie Bertrand 1 collaboration

Marc Heyndrickx 1 collaboration

Dieter Deforce 1 collaboration

Stéphanie Nouws 1 collaboration

Bavo Verhaegen 1 collaboration

Florence Crombé 1 collaboration

Denis Piérard 1 collaboration

Thomas J McGrath 1 collaboration

Franck Limonier 1 collaboration

Giulia Poma 1 collaboration

Jasper Bombeke 1 collaboration

Mirjana Andjelkovic 1 collaboration

Els Van Hoeck 1 collaboration

Laure Joly 1 collaboration

Adrian Covaci 1 collaboration

Stefan Hoffman 1 collaboration

Loïc Lefevre 1 collaboration

Maud Delvoye 1 collaboration

Nancy Hc Roosens 1 collaboration

Sigrid Cj De Keersmaecker 1 collaboration

Bas Berbers 1 collaboration

Assia Saltykova 1 collaboration

Cristina Garcia-Graells 1 collaboration

Patrick Philipp 1 collaboration

Fabrice Arella 1 collaboration

Laura A E Van Poelvoorde 1 collaboration

Isabelle Thomas 1 collaboration

Nina Van Goethem 1 collaboration

Steven Van Gucht 1 collaboration

Xavier Saelens 1 collaboration

Nancy Roosens 1 collaboration

Thomas Delcourt 1 collaboration

Karine Soetaert 1 collaboration

Samira Boarbi 1 collaboration

Vanessa Mathys 1 collaboration

Nina Papazova 1 collaboration

Steven Van Borm 1 collaboration

Mikhayil Hakhverdyan 1 collaboration

Dirk Höper 1 collaboration

Frank Vandenbussche 1 collaboration