Stephen Whitelam

Affiliations

Molecular Foundry, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA.

Publications (29)

Dynamical Large Deviations of Two-Dimensional Kinetically Constrained Models Using a Neural-Network State Ansatz.

Physical review letters

Avec: Corneel Casert , Tom Vieijra , Stephen Whitelam , Isaac Tamblyn

Dynamics of Polymer Nanocapsule Buckling and Collapse Revealed by

Langmuir : the ACS journal of surfaces and colloids

Avec: Sardar B Alam , Giuseppe Soligno , Jiwoong Yang , Karen C Bustillo , Peter Ercius , Haimei Zheng , Stephen Whitelam , Emory M Chan

Erratum: Cooperative Gas Adsorption without a Phase Transition in Metal-Organic Frameworks [Phys. Rev. Lett. 121, 015701 (2018)].

Physical review letters

Avec: Joyjit Kundu , Jürgen F Stilck , Jung-Hoon Lee , Jeffrey B Neaton , David Prendergast , Stephen Whitelam

On the origin of cooperativity effects in the formation of self-assembled molecular networks at the liquid/solid interface.

Chemical science

Avec: Tamara Rinkovec , Demian Kalebic , Wim Dehaen , Stephen Whitelam , Jeremy N Harvey , Steven De Feyter

Ordering, flexibility and frustration in arrays of porphyrin nanorings.

Nature communications

Avec: Alex Summerfield , Matteo Baldoni , Dmitry V Kondratuk , Harry L Anderson , Stephen Whitelam , Juan P Garrahan , Elena Besley , Peter H Beton

Stereochemistry of polypeptoid chain configurations.

Biopolymers

Avec: Ryan K Spencer , Glenn L Butterfoss , John R Edison , James R Eastwood , Stephen Whitelam , Kent Kirshenbaum , Ronald N Zuckermann

Decorated networks of native proteins: nanomaterials with tunable mesoscopic domain size.

Soft matter

Avec: Ioatzin Ríos de Anda , Angélique Coutable-Pennarun , Christopher Brasnett , Stephen Whitelam , Annela Seddon , John Russo , J L Ross Anderson , C Patrick Royall

Neuroevolutionary Learning of Particles and Protocols for Self-Assembly.

Physical review letters

Avec: Stephen Whitelam , Isaac Tamblyn

How to train your demon to do fast information erasure without heat production.

Physical review. E

Avec: Stephen Whitelam

Varied phenomenology of models displaying dynamical large-deviation singularities.

Physical review. E

Avec: Stephen Whitelam , Daniel Jacobson

Improving the Accuracy of Nearest-Neighbor Classification Using Principled Construction and Stochastic Sampling of Training-Set Centroids.

Entropy (Basel, Switzerland)

Avec: Stephen Whitelam

Hysteresis curves reveal the microscopic origin of cooperative CO

The Journal of chemical physics

Avec: John R Edison , Rebecca L Siegelman , Zdeněk Preisler , Joyjit Kundu , Jeffrey R Long , Stephen Whitelam

Learning stochastic dynamics and predicting emergent behavior using transformers.

Nature communications

Avec: Corneel Casert , Isaac Tamblyn , Stephen Whitelam

Free-energy estimates from nonequilibrium trajectories under varying-temperature protocols.

Physical review. E

Avec: Stephen Whitelam

Learning to grow: Control of material self-assembly using evolutionary reinforcement learning.

Physical review. E

Avec: Stephen Whitelam , Isaac Tamblyn

Catalystlike role of impurities in speeding layer-by-layer growth.

Physical review. E

Avec: Tien M Phan , Stephen Whitelam , Jeremy D Schmit

Insights into the Structure and Energy of DNA Nanoassemblies.

Molecules (Basel, Switzerland)

Avec: Andreas Jaekel , Pascal Lill , Stephen Whitelam , Barbara Saccà

Cellular automata can classify data by inducing trajectory phase coexistence.

Physical review. E

Avec: Stephen Whitelam , Isaac Tamblyn

Comment on "Exact large deviation statistics and trajectory phase transition of a deterministic boundary driven cellular automaton".

Physical review. E

Avec: Stephen Whitelam

Learning protocols for the fast and efficient control of active matter.

Nature communications

Avec: Corneel Casert , Stephen Whitelam

Evolutionary reinforcement learning of dynamical large deviations.

The Journal of chemical physics

Avec: Stephen Whitelam , Daniel Jacobson , Isaac Tamblyn

Direct evaluation of dynamical large-deviation rate functions using a variational ansatz.

Physical review. E

Avec: Daniel Jacobson , Stephen Whitelam

Long-Range Exciton Diffusion in Two-Dimensional Assemblies of Cesium Lead Bromide Perovskite Nanocrystals.

ACS nano

Avec: Erika Penzo , Anna Loiudice , Edward S Barnard , Nicholas J Borys , Matthew J Jurow , Monica Lorenzon , Igor Rajzbaum , Edward K Wong , Yi Liu , Adam M Schwartzberg , Stefano Cabrini , Stephen Whitelam , Raffaella Buonsanti , Alexander Weber-Bargioni

Unconstrained peptoid tetramer exhibits a predominant conformation in aqueous solution.

Biopolymers

Avec: Leah T Roe , Jeffrey G Pelton , John R Edison , Glenn L Butterfoss , Blakely W Tresca , Bridgette A LaFaye , Stephen Whitelam , David E Wemmer , Ronald N Zuckermann

Correspondence between neuroevolution and gradient descent.

Nature communications

Avec: Stephen Whitelam , Viktor Selin , Sang-Won Park , Isaac Tamblyn

Optimizing thermodynamic trajectories using evolutionary and gradient-based reinforcement learning.

Physical review. E

Avec: Chris Beeler , Uladzimir Yahorau , Rory Coles , Kyle Mills , Stephen Whitelam , Isaac Tamblyn

Deposition control of model glasses with surface-mediated orientational order.

The Journal of chemical physics

Avec: Stephen Whitelam , Peter Harrowell

Remembering the Work of Phillip L. Geissler: A Coda to His Scientific Trajectory.

Annual review of physical chemistry

Avec: Gregory R Bowman , Stephen J Cox , Christoph Dellago , Kateri H DuBay , Joel D Eaves , Daniel A Fletcher , Layne B Frechette , Michael Grünwald , Katherine Klymko , JiYeon Ku , Ahmad K Omar , Eran Rabani , David R Reichman , Julia R Rogers , Andreana M Rosnik , Grant M Rotskoff , Anna R Schneider , Nadine Schwierz , David A Sivak , Suriyanarayanan Vaikuntanathan , Stephen Whitelam , Asaph Widmer-Cooper

Low-dissipation self-assembly protocols of active sticky particles.

Journal of crystal growth

Avec: Stephen Whitelam , Jeremy D Schmit

Réseau de co-auteurs

Isaac Tamblyn 8 collaborations

Corneel Casert 3 collaborations

John R Edison 3 collaborations

Daniel Jacobson 3 collaborations

Joyjit Kundu 2 collaborations

Glenn L Butterfoss 2 collaborations

Ronald N Zuckermann 2 collaborations

Jeremy D Schmit 2 collaborations

Tom Vieijra 1 collaboration

Sardar B Alam 1 collaboration

Giuseppe Soligno 1 collaboration

Jiwoong Yang 1 collaboration

Karen C Bustillo 1 collaboration

Peter Ercius 1 collaboration

Haimei Zheng 1 collaboration

Emory M Chan 1 collaboration

Jürgen F Stilck 1 collaboration

Jung-Hoon Lee 1 collaboration

Jeffrey B Neaton 1 collaboration

David Prendergast 1 collaboration

Tamara Rinkovec 1 collaboration

Demian Kalebic 1 collaboration

Wim Dehaen 1 collaboration

Jeremy N Harvey 1 collaboration

Steven De Feyter 1 collaboration

Alex Summerfield 1 collaboration

Matteo Baldoni 1 collaboration

Dmitry V Kondratuk 1 collaboration

Harry L Anderson 1 collaboration

Juan P Garrahan 1 collaboration

Elena Besley 1 collaboration

Peter H Beton 1 collaboration

Ryan K Spencer 1 collaboration

James R Eastwood 1 collaboration

Kent Kirshenbaum 1 collaboration

Ioatzin Ríos de Anda 1 collaboration

Angélique Coutable-Pennarun 1 collaboration

Christopher Brasnett 1 collaboration

Annela Seddon 1 collaboration

John Russo 1 collaboration

J L Ross Anderson 1 collaboration

C Patrick Royall 1 collaboration

Rebecca L Siegelman 1 collaboration

Zdeněk Preisler 1 collaboration

Jeffrey R Long 1 collaboration

Tien M Phan 1 collaboration

Andreas Jaekel 1 collaboration

Pascal Lill 1 collaboration

Barbara Saccà 1 collaboration

Erika Penzo 1 collaboration

Anna Loiudice 1 collaboration

Edward S Barnard 1 collaboration

Nicholas J Borys 1 collaboration

Matthew J Jurow 1 collaboration

Monica Lorenzon 1 collaboration

Igor Rajzbaum 1 collaboration

Edward K Wong 1 collaboration

Yi Liu 1 collaboration

Adam M Schwartzberg 1 collaboration

Stefano Cabrini 1 collaboration

Raffaella Buonsanti 1 collaboration

Alexander Weber-Bargioni 1 collaboration

Leah T Roe 1 collaboration

Jeffrey G Pelton 1 collaboration

Blakely W Tresca 1 collaboration

Bridgette A LaFaye 1 collaboration

David E Wemmer 1 collaboration

Viktor Selin 1 collaboration

Sang-Won Park 1 collaboration

Chris Beeler 1 collaboration

Uladzimir Yahorau 1 collaboration

Rory Coles 1 collaboration

Kyle Mills 1 collaboration

Peter Harrowell 1 collaboration

Gregory R Bowman 1 collaboration

Stephen J Cox 1 collaboration

Christoph Dellago 1 collaboration

Kateri H DuBay 1 collaboration

Joel D Eaves 1 collaboration

Daniel A Fletcher 1 collaboration

Layne B Frechette 1 collaboration

Michael Grünwald 1 collaboration

Katherine Klymko 1 collaboration

JiYeon Ku 1 collaboration

Ahmad K Omar 1 collaboration

Eran Rabani 1 collaboration

David R Reichman 1 collaboration

Julia R Rogers 1 collaboration

Andreana M Rosnik 1 collaboration

Grant M Rotskoff 1 collaboration

Anna R Schneider 1 collaboration

Nadine Schwierz 1 collaboration

David A Sivak 1 collaboration

Suriyanarayanan Vaikuntanathan 1 collaboration

Asaph Widmer-Cooper 1 collaboration