Sven Rahmann

Affiliations

Algorithmic Bioinformatics, Center for Bioinformatics Saar and Saarland University, Saarland Informatics Campus, Saarbrücken, Germany.

Publications (26)

Pancreatic cancer acquires resistance to MAPK pathway inhibition by clonal expansion and adaptive DNA hypermethylation.

Clinical epigenetics

Avec: Laura K Godfrey , Jan Forster , Sven-Thorsten Liffers , Christopher Schröder , Johannes Köster , Leonie Henschel , Kerstin U Ludwig , David Lähnemann , Marija Trajkovic-Arsic , Diana Behrens , Aldo Scarpa , Rita T Lawlor , Kathrin E Witzke , Barbara Sitek , Steven A Johnsen , Sven Rahmann , Bernhard Horsthemke , Michael Zeschnigk , Jens T Siveke

A MYCN-driven de-differentiation profile identifies a subgroup of aggressive retinoblastoma.

Communications biology

Avec: Tatsiana Ryl , Elena Afanasyeva , Till Hartmann , Melanie Schwermer , Markus Schneider , Christopher Schröder , Maren Wagemanns , Arthur Bister , Deniz Kanber , Laura Steenpass , Kathrin Schramm , Barbara Jones , David T W Jones , Eva Biewald , Kathy Astrahantseff , Helmut Hannenberg , Sven Rahmann , Dietmar R Lohmann , Alexander Schramm , Petra Ketteler

Interaction-Specific Changes in the Transcriptome of

Frontiers in microbiology

Avec: Daniela Beisser , Christina Bock , Martin W Hahn , Matthijs Vos , Bernd Sures , Sven Rahmann , Jens Boenigk

Improved risk-stratification for posterior fossa ependymoma of childhood considering clinical, histological and genetic features - a retrospective analysis of the HIT ependymoma trial cohort.

Acta neuropathologica communications

Avec: Stephanie T Jünger , Martin Mynarek , Inken Wohlers , Evelyn Dörner , Anja Zur Mühlen , Natalia Velez-Char , Katja von Hoff , Stefan Rutkowski , Monika Warmuth-Metz , Rolf-Dieter Kortmann , Beate Timmermann , Sven Rahmann , Ludger Klein-Hitpass , Andre O von Bueren , Torsten Pietsch

wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data.

BMC bioinformatics

Avec: Marius Wöste , Elsa Leitão , Sandra Laurentino , Bernhard Horsthemke , Sven Rahmann , Christopher Schröder

Fast lightweight accurate xenograft sorting.

Algorithms for molecular biology : AMB

Avec: Jens Zentgraf , Sven Rahmann

Proteomic and bioinformatic profiling of neutrophils in CLL reveals functional defects that predispose to bacterial infections.

Blood advances

Avec: Nirojah Subramaniam , Jenny Bottek , Stephanie Thiebes , Kristina Zec , Matthias Kudla , Camille Soun , Elena de Dios Panal , Julia K Lill , Aaron Pfennig , Ralf Herrmann , Kirsten Bruderek , Sven Rahmann , Sven Brandau , Patricia Johansson , Hans Christian Reinhardt , Jan Dürig , Martina Seiffert , Thilo Bracht , Barbara Sitek , Daniel Robert Engel

Detecting high-scoring local alignments in pangenome graphs.

Bioinformatics (Oxford, England)

Avec: Tizian Schulz , Roland Wittler , Sven Rahmann , Faraz Hach , Jens Stoye

Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics.

Nucleic acids research

Avec: Pascal Hirsch , Leidy-Alejandra G Molano , Annika Engel , Jens Zentgraf , Sven Rahmann , Matthias Hannig , Rolf Müller , Fabian Kern , Andreas Keller , Georges P Schmartz

Genome-Wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome.

Cytogenetic and genome research

Avec: Alexander Kalmbach , Christopher Schröder , Ludger Klein-Hitpass , Karl Nordström , Peter Ulz , Ellen Heitzer , Michael R Speicher , Sven Rahmann , Dagmar Wieczorek , Bernhard Horsthemke , Nuria C Bramswig

Osteosarcopenia, an Asymmetrical Overlap of Two Connected Syndromes: Data from the OsteoSys Study.

Nutrients

Avec: Maryam Pourhassan , Bjoern Buehring , Ulrik Stervbo , Sven Rahmann , Felix Mölder , Sebastian Rütten , Ulrike Trampisch , Nina Babel , Timm Henning Westhoff , Rainer Wirth

GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data.

Bioinformatics (Oxford, England)

Avec: Julia Markowski , Rieke Kempfer , Alexander Kukalev , Ibai Irastorza-Azcarate , Gesa Loof , Birte Kehr , Ana Pombo , Sven Rahmann , Roland F Schwarz

A germ cell-specific ageing pattern in otherwise healthy men.

Aging cell

Avec: Sandra Laurentino , Jann-Frederik Cremers , Bernhard Horsthemke , Frank Tüttelmann , Karen Czeloth , Michael Zitzmann , Eva Pohl , Sven Rahmann , Christopher Schröder , Sven Berres , Klaus Redmann , Claudia Krallmann , Stefan Schlatt , Sabine Kliesch , Jörg Gromoll

Epitope similarity cannot explain the pre-formed T cell immunity towards structural SARS-CoV-2 proteins.

Scientific reports

Avec: Ulrik Stervbo , Sven Rahmann , Toralf Roch , Timm H Westhoff , Nina Babel

Sustainable data analysis with Snakemake.

F1000Research

Avec: Felix Mölder , Kim Philipp Jablonski , Brice Letcher , Michael B Hall , Christopher H Tomkins-Tinch , Vanessa Sochat , Jan Forster , Soohyun Lee , Sven O Twardziok , Alexander Kanitz , Andreas Wilm , Manuel Holtgrewe , Sven Rahmann , Sven Nahnsen , Johannes Köster

Non-responsiveness to cardioprotection by ischaemic preconditioning in Ossabaw minipigs with genetic predisposition to, but without the phenotype of the metabolic syndrome.

Basic research in cardiology

Avec: Petra Kleinbongard , Helmut Raphael Lieder , Andreas Skyschally , Mouhamad Alloosh , Axel Gödecke , Sven Rahmann , Michael Sturek , Gerd Heusch

EpiSegMix: a flexible distribution hidden Markov model with duration modeling for chromatin state discovery.

Bioinformatics (Oxford, England)

Avec: Johanna Elena Schmitz , Nihit Aggarwal , Lukas Laufer , Jörn Walter , Abdulrahman Salhab , Sven Rahmann

Lossless Approximate Pattern Matching: Automated Design of Efficient Search Schemes.

Journal of computational biology : a journal of computational molecular cell biology

Avec: Luca Renders , Lore Depuydt , Sven Rahmann , Jan Fostier

Rapid T-cell receptor interaction grouping with ting.

Bioinformatics (Oxford, England)

Avec: Felix Mölder , Ulrik Stervbo , Lucie Loyal , Petra Bacher , Nina Babel , Sven Rahmann

Machine learning reveals a PD-L1-independent prediction of response to immunotherapy of non-small cell lung cancer by gene expression context.

European journal of cancer (Oxford, England : 1990)

Avec: Marcel Wiesweg , Fabian Mairinger , Henning Reis , Moritz Goetz , Jens Kollmeier , Daniel Misch , Susann Stephan-Falkenau , Thomas Mairinger , Robert F H Walter , Thomas Hager , Martin Metzenmacher , Wilfried E E Eberhardt , Gregor Zaun , Johannes Köster , Martin Stuschke , Clemens Aigner , Kaid Darwiche , Kurt W Schmid , Sven Rahmann , Martin Schuler

Silver stress differentially affects growth of phototrophic and heterotrophic chrysomonad flagellate populations.

Environmental pollution (Barking, Essex : 1987)

Avec: Christina Bock , Sonja Zimmermann , Daniela Beisser , Sarah-Maria Dinglinger , Simone Engelskirchen , Philipp Giesemann , Saskia Klink , Jana Laura Olefeld , Sven Rahmann , Matthijs Vos , Jens Boenigk , Bernd Sures

The Role of Pre-existing Cross-Reactive Central Memory CD4 T-Cells in Vaccination With Previously Unseen Influenza Strains.

Frontiers in immunology

Avec: Mikalai Nienen , Ulrik Stervbo , Felix Mölder , Sviatlana Kaliszczyk , Leon Kuchenbecker , Ludmila Gayova , Brunhilde Schweiger , Karsten Jürchott , Jochen Hecht , Avidan U Neumann , Sven Rahmann , Timm Westhoff , Petra Reinke , Andreas Thiel , Nina Babel

Impact of RAS mutation subtype on clinical outcome-a cross-entity comparison of patients with advanced non-small cell lung cancer and colorectal cancer.

Oncogene

Avec: Marcel Wiesweg , Stefan Kasper , Karl Worm , Thomas Herold , Henning Reis , Linda Sara , Martin Metzenmacher , Annalena Abendroth , Kaid Darwiche , Clemens Aigner , Heiner H Wedemeyer , Fabian A Helfritz , Martin Stuschke , Brigitte Schumacher , Peter Markus , Andreas Paul , Sven Rahmann , Kurt W Schmid , Martin Schuler

Meiotic recombination in the offspring of Microbotryum hybrids and its impact on pathogenicity.

BMC evolutionary biology

Avec: Britta Bueker , Marco Alexandre Guerreiro , Michael E Hood , Andreas Brachmann , Sven Rahmann , Dominik Begerow

Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing.

Frontiers in genetics

Avec: Alicia Isabell Tüns , Till Hartmann , Simon Magin , Rocío Chamorro González , Anton George Henssen , Sven Rahmann , Alexander Schramm , Johannes Köster

Three-Year Mortality of Older Hospitalized Patients with Osteosarcopenia: Data from the OsteoSys Study.

Nutrients

Avec: Maryam Pourhassan , Bjoern Buehring , Ulrik Stervbo , Sven Rahmann , Felix Mölder , Sebastian Rütten , Nina Rosa Neuendorff , Timm Henning Westhoff , Nina Babel , Rainer Wirth

Réseau de co-auteurs

Christopher Schröder 5 collaborations

Ulrik Stervbo 5 collaborations

Felix Mölder 5 collaborations

Nina Babel 5 collaborations

Johannes Köster 4 collaborations

Bernhard Horsthemke 4 collaborations

Jan Forster 2 collaborations

Barbara Sitek 2 collaborations

Till Hartmann 2 collaborations

Alexander Schramm 2 collaborations

Daniela Beisser 2 collaborations

Christina Bock 2 collaborations

Matthijs Vos 2 collaborations

Bernd Sures 2 collaborations

Jens Boenigk 2 collaborations

Ludger Klein-Hitpass 2 collaborations

Sandra Laurentino 2 collaborations

Jens Zentgraf 2 collaborations

Maryam Pourhassan 2 collaborations

Bjoern Buehring 2 collaborations

Sebastian Rütten 2 collaborations

Timm Henning Westhoff 2 collaborations

Rainer Wirth 2 collaborations

Marcel Wiesweg 2 collaborations

Henning Reis 2 collaborations

Martin Metzenmacher 2 collaborations

Martin Stuschke 2 collaborations

Clemens Aigner 2 collaborations

Kaid Darwiche 2 collaborations

Kurt W Schmid 2 collaborations

Martin Schuler 2 collaborations

Laura K Godfrey 1 collaboration

Sven-Thorsten Liffers 1 collaboration

Leonie Henschel 1 collaboration

Kerstin U Ludwig 1 collaboration

David Lähnemann 1 collaboration

Marija Trajkovic-Arsic 1 collaboration

Diana Behrens 1 collaboration

Aldo Scarpa 1 collaboration

Rita T Lawlor 1 collaboration

Kathrin E Witzke 1 collaboration

Steven A Johnsen 1 collaboration

Michael Zeschnigk 1 collaboration

Jens T Siveke 1 collaboration

Tatsiana Ryl 1 collaboration

Elena Afanasyeva 1 collaboration

Melanie Schwermer 1 collaboration

Markus Schneider 1 collaboration

Maren Wagemanns 1 collaboration

Arthur Bister 1 collaboration

Deniz Kanber 1 collaboration

Laura Steenpass 1 collaboration

Kathrin Schramm 1 collaboration

Barbara Jones 1 collaboration

David T W Jones 1 collaboration

Eva Biewald 1 collaboration

Kathy Astrahantseff 1 collaboration

Helmut Hannenberg 1 collaboration

Dietmar R Lohmann 1 collaboration

Petra Ketteler 1 collaboration

Martin W Hahn 1 collaboration

Stephanie T Jünger 1 collaboration

Martin Mynarek 1 collaboration

Inken Wohlers 1 collaboration

Evelyn Dörner 1 collaboration

Anja Zur Mühlen 1 collaboration

Natalia Velez-Char 1 collaboration

Katja von Hoff 1 collaboration

Stefan Rutkowski 1 collaboration

Monika Warmuth-Metz 1 collaboration

Rolf-Dieter Kortmann 1 collaboration

Beate Timmermann 1 collaboration

Andre O von Bueren 1 collaboration

Torsten Pietsch 1 collaboration

Marius Wöste 1 collaboration

Elsa Leitão 1 collaboration

Nirojah Subramaniam 1 collaboration

Jenny Bottek 1 collaboration

Stephanie Thiebes 1 collaboration

Kristina Zec 1 collaboration

Matthias Kudla 1 collaboration

Camille Soun 1 collaboration

Elena de Dios Panal 1 collaboration

Julia K Lill 1 collaboration

Aaron Pfennig 1 collaboration

Ralf Herrmann 1 collaboration

Kirsten Bruderek 1 collaboration

Sven Brandau 1 collaboration

Patricia Johansson 1 collaboration

Hans Christian Reinhardt 1 collaboration

Jan Dürig 1 collaboration

Martina Seiffert 1 collaboration

Thilo Bracht 1 collaboration

Daniel Robert Engel 1 collaboration

Tizian Schulz 1 collaboration

Roland Wittler 1 collaboration

Faraz Hach 1 collaboration

Jens Stoye 1 collaboration

Pascal Hirsch 1 collaboration

Leidy-Alejandra G Molano 1 collaboration

Annika Engel 1 collaboration

Matthias Hannig 1 collaboration

Rolf Müller 1 collaboration

Fabian Kern 1 collaboration

Andreas Keller 1 collaboration

Georges P Schmartz 1 collaboration

Alexander Kalmbach 1 collaboration

Karl Nordström 1 collaboration

Peter Ulz 1 collaboration

Ellen Heitzer 1 collaboration

Michael R Speicher 1 collaboration

Dagmar Wieczorek 1 collaboration

Nuria C Bramswig 1 collaboration

Ulrike Trampisch 1 collaboration

Julia Markowski 1 collaboration

Rieke Kempfer 1 collaboration

Alexander Kukalev 1 collaboration

Ibai Irastorza-Azcarate 1 collaboration

Gesa Loof 1 collaboration

Birte Kehr 1 collaboration

Ana Pombo 1 collaboration

Roland F Schwarz 1 collaboration

Jann-Frederik Cremers 1 collaboration

Frank Tüttelmann 1 collaboration

Karen Czeloth 1 collaboration

Michael Zitzmann 1 collaboration

Eva Pohl 1 collaboration

Sven Berres 1 collaboration

Klaus Redmann 1 collaboration

Claudia Krallmann 1 collaboration

Stefan Schlatt 1 collaboration

Sabine Kliesch 1 collaboration

Jörg Gromoll 1 collaboration

Toralf Roch 1 collaboration

Timm H Westhoff 1 collaboration

Kim Philipp Jablonski 1 collaboration

Brice Letcher 1 collaboration

Michael B Hall 1 collaboration

Christopher H Tomkins-Tinch 1 collaboration

Vanessa Sochat 1 collaboration

Soohyun Lee 1 collaboration

Sven O Twardziok 1 collaboration

Alexander Kanitz 1 collaboration

Andreas Wilm 1 collaboration

Manuel Holtgrewe 1 collaboration

Sven Nahnsen 1 collaboration

Petra Kleinbongard 1 collaboration

Helmut Raphael Lieder 1 collaboration

Andreas Skyschally 1 collaboration

Mouhamad Alloosh 1 collaboration

Axel Gödecke 1 collaboration

Michael Sturek 1 collaboration

Gerd Heusch 1 collaboration

Johanna Elena Schmitz 1 collaboration

Nihit Aggarwal 1 collaboration

Lukas Laufer 1 collaboration

Jörn Walter 1 collaboration

Abdulrahman Salhab 1 collaboration

Luca Renders 1 collaboration

Lore Depuydt 1 collaboration

Jan Fostier 1 collaboration

Lucie Loyal 1 collaboration

Petra Bacher 1 collaboration

Fabian Mairinger 1 collaboration

Moritz Goetz 1 collaboration

Jens Kollmeier 1 collaboration

Daniel Misch 1 collaboration

Susann Stephan-Falkenau 1 collaboration

Thomas Mairinger 1 collaboration

Robert F H Walter 1 collaboration

Thomas Hager 1 collaboration

Wilfried E E Eberhardt 1 collaboration

Gregor Zaun 1 collaboration

Sonja Zimmermann 1 collaboration

Sarah-Maria Dinglinger 1 collaboration

Simone Engelskirchen 1 collaboration

Philipp Giesemann 1 collaboration

Saskia Klink 1 collaboration

Jana Laura Olefeld 1 collaboration

Mikalai Nienen 1 collaboration

Sviatlana Kaliszczyk 1 collaboration

Leon Kuchenbecker 1 collaboration

Ludmila Gayova 1 collaboration

Brunhilde Schweiger 1 collaboration

Karsten Jürchott 1 collaboration

Jochen Hecht 1 collaboration

Avidan U Neumann 1 collaboration

Timm Westhoff 1 collaboration

Petra Reinke 1 collaboration

Andreas Thiel 1 collaboration

Stefan Kasper 1 collaboration

Karl Worm 1 collaboration

Thomas Herold 1 collaboration

Linda Sara 1 collaboration

Annalena Abendroth 1 collaboration

Heiner H Wedemeyer 1 collaboration

Fabian A Helfritz 1 collaboration

Brigitte Schumacher 1 collaboration

Peter Markus 1 collaboration

Andreas Paul 1 collaboration

Britta Bueker 1 collaboration

Marco Alexandre Guerreiro 1 collaboration

Michael E Hood 1 collaboration

Andreas Brachmann 1 collaboration

Dominik Begerow 1 collaboration

Alicia Isabell Tüns 1 collaboration

Simon Magin 1 collaboration

Rocío Chamorro González 1 collaboration

Anton George Henssen 1 collaboration

Nina Rosa Neuendorff 1 collaboration