Tim Treis

Affiliations

BioQuant, University of Heidelberg, Heidelberg, Germany.

Publications (11)

Inferred retinal sensitivity in recessive Stargardt disease using machine learning.

Scientific reports

Avec: Philipp L Müller , Alexandru Odainic , Tim Treis , Philipp Herrmann , Adnan Tufail , Frank G Holz , Maximilian Pfau

GraphCompass: spatial metrics for differential analyses of cell organization across conditions.

Bioinformatics (Oxford, England)

Avec: Mayar Ali , Merel Kuijs , Soroor Hediyeh-Zadeh , Tim Treis , Karin Hrovatin , Giovanni Palla , Anna C Schaar , Fabian J Theis

PROGRESSION OF ABCA4-RELATED RETINOPATHY: Prognostic value of demographic, functional, genetic, and imaging parameters.

Retina (Philadelphia, Pa.)

Avec: Philipp L Müller , Maximilian Pfau , Tim Treis , Isabel Pascual-Camps , Johannes Birtel , Moritz Lindner , Philipp Herrmann , Frank G Holz

Reliability of Retinal Pathology Quantification in Age-Related Macular Degeneration: Implications for Clinical Trials and Machine Learning Applications.

Translational vision science & technology

Avec: Philipp L Müller , Bart Liefers , Tim Treis , Filipa Gomes Rodrigues , Abraham Olvera-Barrios , Bobby Paul , Narendra Dhingra , Andrew Lotery , Clare Bailey , Paul Taylor , Clarisa I Sánchez , Adnan Tufail

SpatialData: an open and universal data framework for spatial omics.

Nature methods

Avec: Luca Marconato , Giovanni Palla , Kevin A Yamauchi , Isaac Virshup , Elyas Heidari , Tim Treis , Wouter-Michiel Vierdag , Marcella Toth , Sonja Stockhaus , Rahul B Shrestha , Benjamin Rombaut , Lotte Pollaris , Laurens Lehner , Harald Vöhringer , Ilia Kats , Yvan Saeys , Sinem K Saka , Wolfgang Huber , Moritz Gerstung , Josh Moore , Fabian J Theis , Oliver Stegle

Foveal structure and visual function in nanophthalmos and posterior microphthalmos.

The British journal of ophthalmology

Avec: Philipp L Müller , Tim Treis , Abdulrahman Alsaedi , Andrew R Webster , Peng Khaw , Michel Michaelides , Louisa Wickham , Dilani Siriwardena , Paul Foster , Mariya Moosajee , Carlos Pavesio , Adnan Tufail , Catherine Egan

High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities.

Nature protocols

Avec: Patrick Müller , Jacobo de la Cuesta-Zuluaga , Michael Kuhn , Maral Baghai Arassi , Tim Treis , Sonja Blasche , Michael Zimmermann , Peer Bork , Kiran Raosaheb Patil , Athanasios Typas , Sarela Garcia-Santamarina , Lisa Maier

Progression, reliability, predicting parameters and sample size calculations for quantitative fundus autofluorescence measures in

The British journal of ophthalmology

Avec: Philipp L Müller , Tim Treis , Adnan Tufail , Frank G Holz

An open-source framework for end-to-end analysis of electronic health record data.

Nature medicine

Avec: Lukas Heumos , Philipp Ehmele , Tim Treis , Julius Upmeier Zu Belzen , Eljas Roellin , Lilly May , Altana Namsaraeva , Nastassya Horlava , Vladimir A Shitov , Xinyue Zhang , Luke Zappia , Rainer Knoll , Niklas J Lang , Leon Hetzel , Isaac Virshup , Lisa Sikkema , Fabiola Curion , Roland Eils , Herbert B Schiller , Anne Hilgendorff , Fabian J Theis

Progression of Retinopathy Secondary to Maternally Inherited Diabetes and Deafness - Evaluation of Predicting Parameters.

American journal of ophthalmology

Avec: Philipp L Müller , Tim Treis , Maximilian Pfau , Simona Degli Esposti , Abdulrahman Alsaedi , Peter Maloca , Konstantinos Balaskas , Andrew Webster , Catherine Egan , Adnan Tufail

Prediction of Function in ABCA4-Related Retinopathy Using Ensemble Machine Learning.

Journal of clinical medicine

Avec: Philipp L Müller , Tim Treis , Alexandru Odainic , Maximilian Pfau , Philipp Herrmann , Adnan Tufail , Frank G Holz

Réseau de co-auteurs

Philipp L Müller 7 collaborations

Adnan Tufail 6 collaborations

Frank G Holz 4 collaborations

Maximilian Pfau 4 collaborations

Philipp Herrmann 3 collaborations

Fabian J Theis 3 collaborations

Alexandru Odainic 2 collaborations

Giovanni Palla 2 collaborations

Isaac Virshup 2 collaborations

Abdulrahman Alsaedi 2 collaborations

Catherine Egan 2 collaborations

Mayar Ali 1 collaboration

Merel Kuijs 1 collaboration

Soroor Hediyeh-Zadeh 1 collaboration

Karin Hrovatin 1 collaboration

Anna C Schaar 1 collaboration

Isabel Pascual-Camps 1 collaboration

Johannes Birtel 1 collaboration

Moritz Lindner 1 collaboration

Bart Liefers 1 collaboration

Filipa Gomes Rodrigues 1 collaboration

Abraham Olvera-Barrios 1 collaboration

Bobby Paul 1 collaboration

Narendra Dhingra 1 collaboration

Andrew Lotery 1 collaboration

Clare Bailey 1 collaboration

Paul Taylor 1 collaboration

Clarisa I Sánchez 1 collaboration

Luca Marconato 1 collaboration

Kevin A Yamauchi 1 collaboration

Elyas Heidari 1 collaboration

Wouter-Michiel Vierdag 1 collaboration

Marcella Toth 1 collaboration

Sonja Stockhaus 1 collaboration

Rahul B Shrestha 1 collaboration

Benjamin Rombaut 1 collaboration

Lotte Pollaris 1 collaboration

Laurens Lehner 1 collaboration

Harald Vöhringer 1 collaboration

Ilia Kats 1 collaboration

Yvan Saeys 1 collaboration

Sinem K Saka 1 collaboration

Wolfgang Huber 1 collaboration

Moritz Gerstung 1 collaboration

Josh Moore 1 collaboration

Oliver Stegle 1 collaboration

Andrew R Webster 1 collaboration

Peng Khaw 1 collaboration

Michel Michaelides 1 collaboration

Louisa Wickham 1 collaboration

Dilani Siriwardena 1 collaboration

Paul Foster 1 collaboration

Mariya Moosajee 1 collaboration

Carlos Pavesio 1 collaboration

Patrick Müller 1 collaboration

Jacobo de la Cuesta-Zuluaga 1 collaboration

Michael Kuhn 1 collaboration

Maral Baghai Arassi 1 collaboration

Sonja Blasche 1 collaboration

Michael Zimmermann 1 collaboration

Peer Bork 1 collaboration

Kiran Raosaheb Patil 1 collaboration

Athanasios Typas 1 collaboration

Sarela Garcia-Santamarina 1 collaboration

Lisa Maier 1 collaboration

Lukas Heumos 1 collaboration

Philipp Ehmele 1 collaboration

Julius Upmeier Zu Belzen 1 collaboration

Eljas Roellin 1 collaboration

Lilly May 1 collaboration

Altana Namsaraeva 1 collaboration

Nastassya Horlava 1 collaboration

Vladimir A Shitov 1 collaboration

Xinyue Zhang 1 collaboration

Luke Zappia 1 collaboration

Rainer Knoll 1 collaboration

Niklas J Lang 1 collaboration

Leon Hetzel 1 collaboration

Lisa Sikkema 1 collaboration

Fabiola Curion 1 collaboration

Roland Eils 1 collaboration

Herbert B Schiller 1 collaboration

Anne Hilgendorff 1 collaboration

Simona Degli Esposti 1 collaboration

Peter Maloca 1 collaboration

Konstantinos Balaskas 1 collaboration

Andrew Webster 1 collaboration