Fabiola Curion

Affiliations

Department of Computational Health, Institute of Computational Biology, Helmholtz Munich, Germany.
Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Munich, Germany.

Publications (9)

Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis.

Genome biology

Avec: Fabiola Curion , Charlotte Rich-Griffin , Devika Agarwal , Sarah Ouologuem , Kevin Rue-Albrecht , Lilly May , Giulia E L Garcia , Lukas Heumos , Tom Thomas , Wojciech Lason , David Sims , Fabian J Theis , Calliope A Dendrou

An immunodominant NP

Nature immunology

Avec: Yanchun Peng , Suet Ling Felce , Danning Dong , Frank Penkava , Alexander J Mentzer , Xuan Yao , Guihai Liu , Zixi Yin , Ji-Li Chen , Yongxu Lu , Dannielle Wellington , Peter A C Wing , Delaney C C Dominey-Foy , Chen Jin , Wenbo Wang , Megat Abd Hamid , Ricardo A Fernandes , Beibei Wang , Anastasia Fries , Xiaodong Zhuang , Neil Ashley , Timothy Rostron , Craig Waugh , Paul Sopp , Philip Hublitz , Ryan Beveridge , Tiong Kit Tan , Christina Dold , Andrew J Kwok , Charlotte Rich-Griffin , Wanwisa Dejnirattisa , Chang Liu , Prathiba Kurupati , Isar Nassiri , Robert A Watson , Orion Tong , Chelsea A Taylor , Piyush Kumar Sharma , Bo Sun , Fabiola Curion , Santiago Revale , Lucy C Garner , Kathrin Jansen , Ricardo C Ferreira , Moustafa Attar , Jeremy W Fry , Rebecca A Russell , Auteur inconnu , Hans J Stauss , William James , Alain Townsend , Ling-Pei Ho , Paul Klenerman , Juthathip Mongkolsapaya , Gavin R Screaton , Calliope Dendrou , Stephen N Sansom , Rachael Bashford-Rogers , Benny Chain , Geoffrey L Smith , Jane A McKeating , Benjamin P Fairfax , Paul Bowness , Andrew J McMichael , Graham Ogg , Julian C Knight , Tao Dong

Best practices for single-cell analysis across modalities.

Nature reviews. Genetics

Avec: Lukas Heumos , Anna C Schaar , Christopher Lance , Anastasia Litinetskaya , Felix Drost , Luke Zappia , Malte D Lücken , Daniel C Strobl , Juan Henao , Fabiola Curion , Auteur inconnu , Herbert B Schiller , Fabian J Theis

Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples.

RNA biology

Avec: Fabiola Curion , Adam E Handel , Moustafa Attar , Giuseppe Gallone , Rory Bowden , M Zameel Cader , Michael B Clark

Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories.

Genome research

Avec: Alexandra Pokhilko , Adam E Handel , Fabiola Curion , Viola Volpato , Emma S Whiteley , Sunniva Bøstrand , Sarah E Newey , Colin J Akerman , Caleb Webber , Michael B Clark , Rory Bowden , M Zameel Cader

hadge: a comprehensive pipeline for donor deconvolution in single-cell studies.

Genome biology

Avec: Fabiola Curion , Xichen Wu , Lukas Heumos , Mylene Mariana Gonzales André , Lennard Halle , Matiss Ozols , Melissa Grant-Peters , Charlotte Rich-Griffin , Hing-Yuen Yeung , Calliope A Dendrou , Herbert B Schiller , Fabian J Theis

High-resolution transcriptional landscape of xeno-free human induced pluripotent stem cell-derived cerebellar organoids.

Scientific reports

Avec: Samuel Nayler , Devika Agarwal , Fabiola Curion , Rory Bowden , Esther B E Becker

Machine learning integrative approaches to advance computational immunology.

Genome medicine

Avec: Fabiola Curion , Fabian J Theis

An open-source framework for end-to-end analysis of electronic health record data.

Nature medicine

Avec: Lukas Heumos , Philipp Ehmele , Tim Treis , Julius Upmeier Zu Belzen , Eljas Roellin , Lilly May , Altana Namsaraeva , Nastassya Horlava , Vladimir A Shitov , Xinyue Zhang , Luke Zappia , Rainer Knoll , Niklas J Lang , Leon Hetzel , Isaac Virshup , Lisa Sikkema , Fabiola Curion , Roland Eils , Herbert B Schiller , Anne Hilgendorff , Fabian J Theis

Réseau de co-auteurs

Fabian J Theis 5 collaborations

Lukas Heumos 4 collaborations

Charlotte Rich-Griffin 3 collaborations

Herbert B Schiller 3 collaborations

Rory Bowden 3 collaborations

Devika Agarwal 2 collaborations

Lilly May 2 collaborations

Calliope A Dendrou 2 collaborations

Moustafa Attar 2 collaborations

None None 2 collaborations

Luke Zappia 2 collaborations

Adam E Handel 2 collaborations

M Zameel Cader 2 collaborations

Michael B Clark 2 collaborations

Sarah Ouologuem 1 collaboration

Kevin Rue-Albrecht 1 collaboration

Giulia E L Garcia 1 collaboration

Tom Thomas 1 collaboration

Wojciech Lason 1 collaboration

David Sims 1 collaboration

Yanchun Peng 1 collaboration

Suet Ling Felce 1 collaboration

Danning Dong 1 collaboration

Frank Penkava 1 collaboration

Alexander J Mentzer 1 collaboration

Xuan Yao 1 collaboration

Guihai Liu 1 collaboration

Zixi Yin 1 collaboration

Ji-Li Chen 1 collaboration

Yongxu Lu 1 collaboration

Dannielle Wellington 1 collaboration

Peter A C Wing 1 collaboration

Delaney C C Dominey-Foy 1 collaboration

Chen Jin 1 collaboration

Wenbo Wang 1 collaboration

Megat Abd Hamid 1 collaboration

Ricardo A Fernandes 1 collaboration

Beibei Wang 1 collaboration

Anastasia Fries 1 collaboration

Xiaodong Zhuang 1 collaboration

Neil Ashley 1 collaboration

Timothy Rostron 1 collaboration

Craig Waugh 1 collaboration

Paul Sopp 1 collaboration

Philip Hublitz 1 collaboration

Ryan Beveridge 1 collaboration

Tiong Kit Tan 1 collaboration

Christina Dold 1 collaboration

Andrew J Kwok 1 collaboration

Wanwisa Dejnirattisa 1 collaboration

Chang Liu 1 collaboration

Prathiba Kurupati 1 collaboration

Isar Nassiri 1 collaboration

Robert A Watson 1 collaboration

Orion Tong 1 collaboration

Chelsea A Taylor 1 collaboration

Piyush Kumar Sharma 1 collaboration

Bo Sun 1 collaboration

Santiago Revale 1 collaboration

Lucy C Garner 1 collaboration

Kathrin Jansen 1 collaboration

Ricardo C Ferreira 1 collaboration

Jeremy W Fry 1 collaboration

Rebecca A Russell 1 collaboration

Hans J Stauss 1 collaboration

William James 1 collaboration

Alain Townsend 1 collaboration

Ling-Pei Ho 1 collaboration

Paul Klenerman 1 collaboration

Juthathip Mongkolsapaya 1 collaboration

Gavin R Screaton 1 collaboration

Calliope Dendrou 1 collaboration

Stephen N Sansom 1 collaboration

Rachael Bashford-Rogers 1 collaboration

Benny Chain 1 collaboration

Geoffrey L Smith 1 collaboration

Jane A McKeating 1 collaboration

Benjamin P Fairfax 1 collaboration

Paul Bowness 1 collaboration

Andrew J McMichael 1 collaboration

Graham Ogg 1 collaboration

Julian C Knight 1 collaboration

Tao Dong 1 collaboration

Anna C Schaar 1 collaboration

Christopher Lance 1 collaboration

Anastasia Litinetskaya 1 collaboration

Felix Drost 1 collaboration

Malte D Lücken 1 collaboration

Daniel C Strobl 1 collaboration

Juan Henao 1 collaboration

Giuseppe Gallone 1 collaboration

Alexandra Pokhilko 1 collaboration

Viola Volpato 1 collaboration

Emma S Whiteley 1 collaboration

Sunniva Bøstrand 1 collaboration

Sarah E Newey 1 collaboration

Colin J Akerman 1 collaboration

Caleb Webber 1 collaboration

Xichen Wu 1 collaboration

Mylene Mariana Gonzales André 1 collaboration

Lennard Halle 1 collaboration

Matiss Ozols 1 collaboration

Melissa Grant-Peters 1 collaboration

Hing-Yuen Yeung 1 collaboration

Samuel Nayler 1 collaboration

Esther B E Becker 1 collaboration

Philipp Ehmele 1 collaboration

Tim Treis 1 collaboration

Julius Upmeier Zu Belzen 1 collaboration

Eljas Roellin 1 collaboration

Altana Namsaraeva 1 collaboration

Nastassya Horlava 1 collaboration

Vladimir A Shitov 1 collaboration

Xinyue Zhang 1 collaboration

Rainer Knoll 1 collaboration

Niklas J Lang 1 collaboration

Leon Hetzel 1 collaboration

Isaac Virshup 1 collaboration

Lisa Sikkema 1 collaboration

Roland Eils 1 collaboration

Anne Hilgendorff 1 collaboration