Timothy Tickle

Affiliations

Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Publications (8)

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq.

Nature methods

Avec: Bo Li , Joshua Gould , Yiming Yang , Siranush Sarkizova , Marcin Tabaka , Orr Ashenberg , Yanay Rosen , Michal Slyper , Monika S Kowalczyk , Alexandra-Chloé Villani , Timothy Tickle , Nir Hacohen , Orit Rozenblatt-Rosen , Aviv Regev

Toward a data infrastructure for the Plant Cell Atlas.

Plant physiology

Avec: Noah Fahlgren , Muskan Kapoor , Galabina Yordanova , Irene Papatheodorou , Jamie Waese , Benjamin Cole , Peter Harrison , Doreen Ware , Timothy Tickle , Benedict Paten , Tony Burdett , Christine G Elsik , Christopher K Tuggle , Nicholas J Provart

Targeted

Cell reports methods

Avec: Brian J Haas , Alexander Dobin , Mahmoud Ghandi , Anne Van Arsdale , Timothy Tickle , James T Robinson , Riaz Gillani , Simon Kasif , Aviv Regev

The single-cell opioid responses in the context of HIV (SCORCH) consortium.

Molecular psychiatry

Avec: Seth A Ament , Rianne R Campbell , Mary Kay Lobo , Joseph P Receveur , Kriti Agrawal , Alejandra Borjabad , Siddappa N Byrareddy , Linda Chang , Declan Clarke , Prashant Emani , Dana Gabuzda , Kyle J Gaulton , Michelle Giglio , Federico M Giorgi , Busra Gok , Chittibabu Guda , Eran Hadas , Brian R Herb , Wen Hu , Anita Huttner , Mohammad R Ishmam , Michelle M Jacobs , Jennifer Kelschenbach , Dong-Wook Kim , Cheyu Lee , Shuhui Liu , Xiaokun Liu , Bertha K Madras , Anup A Mahurkar , Deborah C Mash , Eran A Mukamel , Meng Niu , Richard M O'Connor , Chelsea M Pagan , Alina P S Pang , Piya Pillai , Vez Repunte-Canonigo , W Brad Ruzicka , Jay Stanley , Timothy Tickle , Shang-Yi A Tsai , Allen Wang , Lauren Wills , Alyssa M Wilson , Susan N Wright , Siwei Xu , Junchen Yang , Maryam Zand , Le Zhang , Jing Zhang , Schahram Akbarian , Shilpa Buch , Christine S Cheng , Michael J Corley , Howard S Fox , Mark Gerstein , Suryaram Gummuluru , Myriam Heiman , Ya-Chi Ho , Manolis Kellis , Paul J Kenny , Yuval Kluger , Teresa A Milner , David J Moore , Susan Morgello , Lishomwa C Ndhlovu , Tariq M Rana , Pietro Paolo Sanna , John S Satterlee , Nenad Sestan , Stephen A Spector , Serena Spudich , Hagen U Tilgner , David J Volsky , Owen R White , Dionne W Williams , Hongkui Zeng

A guide to the BRAIN Initiative Cell Census Network data ecosystem.

PLoS biology

Avec: Michael Hawrylycz , Maryann E Martone , Giorgio A Ascoli , Jan G Bjaalie , Hong-Wei Dong , Satrajit S Ghosh , Jesse Gillis , Ronna Hertzano , David R Haynor , Patrick R Hof , Yongsoo Kim , Ed Lein , Yufeng Liu , Jeremy A Miller , Partha P Mitra , Eran Mukamel , Lydia Ng , David Osumi-Sutherland , Hanchuan Peng , Patrick L Ray , Raymond Sanchez , Aviv Regev , Alex Ropelewski , Richard H Scheuermann , Shawn Zheng Kai Tan , Carol L Thompson , Timothy Tickle , Hagen Tilgner , Merina Varghese , Brock Wester , Owen White , Hongkui Zeng , Brian Aevermann , David Allemang , Seth Ament , Thomas L Athey , Cody Baker , Katherine S Baker , Pamela M Baker , Anita Bandrowski , Samik Banerjee , Prajal Bishwakarma , Ambrose Carr , Min Chen , Roni Choudhury , Jonah Cool , Heather Creasy , Florence D'Orazi , Kylee Degatano , Benjamin Dichter , Song-Lin Ding , Tim Dolbeare , Joseph R Ecker , Rongxin Fang , Jean-Christophe Fillion-Robin , Timothy P Fliss , James Gee , Tom Gillespie , Nathan Gouwens , Guo-Qiang Zhang , Yaroslav O Halchenko , Nomi L Harris , Brian R Herb , Houri Hintiryan , Gregory Hood , Sam Horvath , Bingxing Huo , Dorota Jarecka , Shengdian Jiang , Farzaneh Khajouei , Elizabeth A Kiernan , Huseyin Kir , Lauren Kruse , Changkyu Lee , Boudewijn Lelieveldt , Yang Li , Hanqing Liu , Lijuan Liu , Anup Markuhar , James Mathews , Kaylee L Mathews , Chris Mezias , Michael I Miller , Tyler Mollenkopf , Shoaib Mufti , Christopher J Mungall , Joshua Orvis , Maja A Puchades , Lei Qu , Joseph P Receveur , Bing Ren , Nathan Sjoquist , Brian Staats , Daniel Tward , Cindy T J van Velthoven , Quanxin Wang , Fangming Xie , Hua Xu , Zizhen Yao , Zhixi Yun , Yun Renee Zhang , W Jim Zheng , Brian Zingg

MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data.

Genome biology

Avec: Irzam Sarfraz , Yichen Wang , Amulya Shastry , Wei Kheng Teh , Artem Sokolov , Brian R Herb , Heather H Creasy , Isaac Virshup , Ruben Dries , Kylee Degatano , Anup Mahurkar , Daniel J Schnell , Pedro Madrigal , Jason Hilton , Nils Gehlenborg , Timothy Tickle , Joshua D Campbell

LungMAP Portal Ecosystem: Systems-Level Exploration of the Lung.

American journal of respiratory cell and molecular biology

Avec: Nathan Gaddis , Joshua Fortriede , Minzhe Guo , Eric E Bardes , Michal Kouril , Scott Tabar , Kevin Burns , Maryanne E Ardini-Poleske , Stephanie Loos , Daniel Schnell , Kang Jin , Balaji Iyer , Yina Du , Bing-Xing Huo , Anukana Bhattacharjee , Jeff Korte , Ruchi Munshi , Victoria Smith , Andrew Herbst , Joseph A Kitzmiller , Geremy C Clair , James P Carson , Joshua Adkins , Edward E Morrisey , Gloria S Pryhuber , Ravi Misra , Jeffrey A Whitsett , Xin Sun , Trevor Heathorn , Benedict Paten , V B Surya Prasath , Yan Xu , Tim Tickle , Bruce J Aronow , Nathan Salomonis , Auteur inconnu

Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.

bioRxiv : the preprint server for biology

Avec: Yichen Wang , Irzam Sarfraz , Wei Kheng Teh , Artem Sokolov , Brian R Herb , Heather H Creasy , Isaac Virshup , Ruben Dries , Kylee Degatano , Anup Mahurkar , Daniel J Schnell , Pedro Madrigal , Jason Hilton , Nils Gehlenborg , Timothy Tickle , Joshua D Campbell

Réseau de co-auteurs

Brian R Herb 4 collaborations

Aviv Regev 3 collaborations

Kylee Degatano 3 collaborations

Benedict Paten 2 collaborations

Joseph P Receveur 2 collaborations

Hongkui Zeng 2 collaborations

Irzam Sarfraz 2 collaborations

Yichen Wang 2 collaborations

Wei Kheng Teh 2 collaborations

Artem Sokolov 2 collaborations

Heather H Creasy 2 collaborations

Isaac Virshup 2 collaborations

Ruben Dries 2 collaborations

Anup Mahurkar 2 collaborations

Daniel J Schnell 2 collaborations

Pedro Madrigal 2 collaborations

Jason Hilton 2 collaborations

Nils Gehlenborg 2 collaborations

Joshua D Campbell 2 collaborations

Bo Li 1 collaboration

Joshua Gould 1 collaboration

Yiming Yang 1 collaboration

Siranush Sarkizova 1 collaboration

Marcin Tabaka 1 collaboration

Orr Ashenberg 1 collaboration

Yanay Rosen 1 collaboration

Michal Slyper 1 collaboration

Monika S Kowalczyk 1 collaboration

Alexandra-Chloé Villani 1 collaboration

Nir Hacohen 1 collaboration

Orit Rozenblatt-Rosen 1 collaboration

Noah Fahlgren 1 collaboration

Muskan Kapoor 1 collaboration

Galabina Yordanova 1 collaboration

Irene Papatheodorou 1 collaboration

Jamie Waese 1 collaboration

Benjamin Cole 1 collaboration

Peter Harrison 1 collaboration

Doreen Ware 1 collaboration

Tony Burdett 1 collaboration

Christine G Elsik 1 collaboration

Christopher K Tuggle 1 collaboration

Nicholas J Provart 1 collaboration

Brian J Haas 1 collaboration

Alexander Dobin 1 collaboration

Mahmoud Ghandi 1 collaboration

Anne Van Arsdale 1 collaboration

James T Robinson 1 collaboration

Riaz Gillani 1 collaboration

Simon Kasif 1 collaboration

Seth A Ament 1 collaboration

Rianne R Campbell 1 collaboration

Mary Kay Lobo 1 collaboration

Kriti Agrawal 1 collaboration

Alejandra Borjabad 1 collaboration

Siddappa N Byrareddy 1 collaboration

Linda Chang 1 collaboration

Declan Clarke 1 collaboration

Prashant Emani 1 collaboration

Dana Gabuzda 1 collaboration

Kyle J Gaulton 1 collaboration

Michelle Giglio 1 collaboration

Federico M Giorgi 1 collaboration

Busra Gok 1 collaboration

Chittibabu Guda 1 collaboration

Eran Hadas 1 collaboration

Wen Hu 1 collaboration

Anita Huttner 1 collaboration

Mohammad R Ishmam 1 collaboration

Michelle M Jacobs 1 collaboration

Jennifer Kelschenbach 1 collaboration

Dong-Wook Kim 1 collaboration

Cheyu Lee 1 collaboration

Shuhui Liu 1 collaboration

Xiaokun Liu 1 collaboration

Bertha K Madras 1 collaboration

Anup A Mahurkar 1 collaboration

Deborah C Mash 1 collaboration

Eran A Mukamel 1 collaboration

Meng Niu 1 collaboration

Richard M O'Connor 1 collaboration

Chelsea M Pagan 1 collaboration

Alina P S Pang 1 collaboration

Piya Pillai 1 collaboration

Vez Repunte-Canonigo 1 collaboration

W Brad Ruzicka 1 collaboration

Jay Stanley 1 collaboration

Shang-Yi A Tsai 1 collaboration

Allen Wang 1 collaboration

Lauren Wills 1 collaboration

Alyssa M Wilson 1 collaboration

Susan N Wright 1 collaboration

Siwei Xu 1 collaboration

Junchen Yang 1 collaboration

Maryam Zand 1 collaboration

Le Zhang 1 collaboration

Jing Zhang 1 collaboration

Schahram Akbarian 1 collaboration

Shilpa Buch 1 collaboration

Christine S Cheng 1 collaboration

Michael J Corley 1 collaboration

Howard S Fox 1 collaboration

Mark Gerstein 1 collaboration

Suryaram Gummuluru 1 collaboration

Myriam Heiman 1 collaboration

Ya-Chi Ho 1 collaboration

Manolis Kellis 1 collaboration

Paul J Kenny 1 collaboration

Yuval Kluger 1 collaboration

Teresa A Milner 1 collaboration

David J Moore 1 collaboration

Susan Morgello 1 collaboration

Lishomwa C Ndhlovu 1 collaboration

Tariq M Rana 1 collaboration

Pietro Paolo Sanna 1 collaboration

John S Satterlee 1 collaboration

Nenad Sestan 1 collaboration

Stephen A Spector 1 collaboration

Serena Spudich 1 collaboration

Hagen U Tilgner 1 collaboration

David J Volsky 1 collaboration

Owen R White 1 collaboration

Dionne W Williams 1 collaboration

Michael Hawrylycz 1 collaboration

Maryann E Martone 1 collaboration

Giorgio A Ascoli 1 collaboration

Jan G Bjaalie 1 collaboration

Hong-Wei Dong 1 collaboration

Satrajit S Ghosh 1 collaboration

Jesse Gillis 1 collaboration

Ronna Hertzano 1 collaboration

David R Haynor 1 collaboration

Patrick R Hof 1 collaboration

Yongsoo Kim 1 collaboration

Ed Lein 1 collaboration

Yufeng Liu 1 collaboration

Jeremy A Miller 1 collaboration

Partha P Mitra 1 collaboration

Eran Mukamel 1 collaboration

Lydia Ng 1 collaboration

David Osumi-Sutherland 1 collaboration

Hanchuan Peng 1 collaboration

Patrick L Ray 1 collaboration

Raymond Sanchez 1 collaboration

Alex Ropelewski 1 collaboration

Richard H Scheuermann 1 collaboration

Shawn Zheng Kai Tan 1 collaboration

Carol L Thompson 1 collaboration

Hagen Tilgner 1 collaboration

Merina Varghese 1 collaboration

Brock Wester 1 collaboration

Owen White 1 collaboration

Brian Aevermann 1 collaboration

David Allemang 1 collaboration

Seth Ament 1 collaboration

Thomas L Athey 1 collaboration

Cody Baker 1 collaboration

Katherine S Baker 1 collaboration

Pamela M Baker 1 collaboration

Anita Bandrowski 1 collaboration

Samik Banerjee 1 collaboration

Prajal Bishwakarma 1 collaboration

Ambrose Carr 1 collaboration

Min Chen 1 collaboration

Roni Choudhury 1 collaboration

Jonah Cool 1 collaboration

Heather Creasy 1 collaboration

Florence D'Orazi 1 collaboration

Benjamin Dichter 1 collaboration

Song-Lin Ding 1 collaboration

Tim Dolbeare 1 collaboration

Joseph R Ecker 1 collaboration

Rongxin Fang 1 collaboration

Jean-Christophe Fillion-Robin 1 collaboration

Timothy P Fliss 1 collaboration

James Gee 1 collaboration

Tom Gillespie 1 collaboration

Nathan Gouwens 1 collaboration

Guo-Qiang Zhang 1 collaboration

Yaroslav O Halchenko 1 collaboration

Nomi L Harris 1 collaboration

Houri Hintiryan 1 collaboration

Gregory Hood 1 collaboration

Sam Horvath 1 collaboration

Bingxing Huo 1 collaboration

Dorota Jarecka 1 collaboration

Shengdian Jiang 1 collaboration

Farzaneh Khajouei 1 collaboration

Elizabeth A Kiernan 1 collaboration

Huseyin Kir 1 collaboration

Lauren Kruse 1 collaboration

Changkyu Lee 1 collaboration

Boudewijn Lelieveldt 1 collaboration

Yang Li 1 collaboration

Hanqing Liu 1 collaboration

Lijuan Liu 1 collaboration

Anup Markuhar 1 collaboration

James Mathews 1 collaboration

Kaylee L Mathews 1 collaboration

Chris Mezias 1 collaboration

Michael I Miller 1 collaboration

Tyler Mollenkopf 1 collaboration

Shoaib Mufti 1 collaboration

Christopher J Mungall 1 collaboration

Joshua Orvis 1 collaboration

Maja A Puchades 1 collaboration

Lei Qu 1 collaboration

Bing Ren 1 collaboration

Nathan Sjoquist 1 collaboration

Brian Staats 1 collaboration

Daniel Tward 1 collaboration

Cindy T J van Velthoven 1 collaboration

Quanxin Wang 1 collaboration

Fangming Xie 1 collaboration

Hua Xu 1 collaboration

Zizhen Yao 1 collaboration

Zhixi Yun 1 collaboration

Yun Renee Zhang 1 collaboration

W Jim Zheng 1 collaboration

Brian Zingg 1 collaboration

Amulya Shastry 1 collaboration

Nathan Gaddis 1 collaboration

Joshua Fortriede 1 collaboration

Minzhe Guo 1 collaboration

Eric E Bardes 1 collaboration

Michal Kouril 1 collaboration

Scott Tabar 1 collaboration

Kevin Burns 1 collaboration

Maryanne E Ardini-Poleske 1 collaboration

Stephanie Loos 1 collaboration

Daniel Schnell 1 collaboration

Kang Jin 1 collaboration

Balaji Iyer 1 collaboration

Yina Du 1 collaboration

Bing-Xing Huo 1 collaboration

Anukana Bhattacharjee 1 collaboration

Jeff Korte 1 collaboration

Ruchi Munshi 1 collaboration

Victoria Smith 1 collaboration

Andrew Herbst 1 collaboration

Joseph A Kitzmiller 1 collaboration

Geremy C Clair 1 collaboration

James P Carson 1 collaboration

Joshua Adkins 1 collaboration

Edward E Morrisey 1 collaboration

Gloria S Pryhuber 1 collaboration

Ravi Misra 1 collaboration

Jeffrey A Whitsett 1 collaboration

Xin Sun 1 collaboration

Trevor Heathorn 1 collaboration

V B Surya Prasath 1 collaboration

Yan Xu 1 collaboration

Tim Tickle 1 collaboration

Bruce J Aronow 1 collaboration

Nathan Salomonis 1 collaboration

None None 1 collaboration