Valentin Loux

Affiliations

MaIAGE, INRA, Université Paris-Saclay, Jouy-en-Josas, 78350, France.

Publications (22)

Bioinformatics Tools and Workflow to Select Blood Biomarkers for Early Cancer Diagnosis: An Application to Pancreatic Cancer.

Proteomics

Avec: Yves Vandenbrouck , David Christiany , Florence Combes , Valentin Loux , Virginie Brun

Designing an In Silico Strategy to Select Tissue-Leakage Biomarkers Using the Galaxy Framework.

Methods in molecular biology (Clifton, N.J.)

Avec: Lien Nguyen , Virginie Brun , Florence Combes , Valentin Loux , Yves Vandenbrouck

The complete genome sequence of Mycobacterium bovis Mb3601, a SB0120 spoligotype strain representative of a new clonal group.

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

Avec: Maxime Branger , Valentin Loux , Thierry Cochard , Maria Laura Boschiroli , Franck Biet , Lorraine Michelet

Insights into the cyanosphere: capturing the respective metabolisms of cyanobacteria and chemotrophic bacteria in natural conditions?

Environmental microbiology reports

Avec: Noémie Pascault , Olivier Rué , Valentin Loux , Jacques Pédron , Véronique Martin , Jennifer Tambosco , Cécile Bernard , Jean-François Humbert , Julie Leloup

Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions.

Journal of environmental management

Avec: Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Mahendra Mariadassou , Valentin Loux , Cédric Midoux , Iolanda Cristina Silveira Duarte , Edson Luiz Silva , Ariane Bize , Maria Bernadete Amâncio Varesche

Gene co-expression network analysis of the human gut commensal bacterium Faecalibacterium prausnitzii in R-Shiny.

PloS one

Avec: Sandrine Auger , Virginie Mournetas , Hélène Chiapello , Valentin Loux , Philippe Langella , Jean-Marc Chatel

A comprehensive, large-scale analysis of "terroir" cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors.

ISME communications

Avec: Françoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Olivier Rué , Cécile Neuvéglise , Pierre Renault , Etienne Rifa , Sébastien Theil , Valentin Loux , Corinne Cruaud , Frederick Gavory , Valérie Barbe , Ronan Lasbleiz , Frédéric Gaucheron , Céline Spelle , Céline Delbès

The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition.

The ISME journal

Avec: Jeffrey K Cornuault , Elisabeth Moncaut , Valentin Loux , Aurélie Mathieu , Harry Sokol , Marie-Agnès Petit , Marianne De Paepe

Draft Genome Sequence of the Lignocellulolytic and Thermophilic Bacterium Thermobacillus xylanilyticus XE.

Microbiology resource announcements

Avec: Harivony Rakotoarivonina , Valentin Loux , Christelle Doliwa , Véronique Martin , Caroline Rémond

Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses.

Food research international (Ottawa, Ont.)

Avec: Eric Dugat-Bony , Pascal Bonnarme , Sébastien Fraud , Jessie Catellote , Anne-Sophie Sarthou , Valentin Loux , Olivier Rué , Nadège Bel , Sarah Chuzeville , Sandra Helinck

Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach.

PloS one

Avec: Sandra Dérozier , Robert Bossy , Louise Deléger , Mouhamadou Ba , Estelle Chaix , Olivier Harlé , Valentin Loux , Hélène Falentin , Claire Nédellec

Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere.

Data in brief

Avec: Simon Poirier , Ngoc-Du Martin Luong , Valérie Anthoine , Sandrine Guillou , Jeanne-Marie Membré , Nicolas Moriceau , Sandrine Rezé , Monique Zagorec , Carole Feurer , Bastien Frémaux , Sabine Jeuge , Emeline Robieu , Marie Champomier-Vergès , Gwendoline Coeuret , Emilie Cauchie , Georges Daube , Nicolas Korsak , Louis Coroller , Noémie Desriac , Marie-Hélène Desmonts , Rodérick Gohier , Dalal Werner , Valentin Loux , Olivier Rué , Marie-Hélène Dohollou , Tatiana Defosse , Stéphane Chaillou

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater.

The Science of the total environment

Avec: Tiago P Delforno , Thais Z Macedo , Cédric Midoux , Gileno V Lacerda , Olivier Rué , Mahendra Mariadassou , Valentin Loux , Maria B A Varesche , Théodore Bouchez , Ariane Bize , Valéria M Oliveira

GO Enrichment Analysis for Differential Proteomics Using ProteoRE.

Methods in molecular biology (Clifton, N.J.)

Avec: Florence Combes , Valentin Loux , Yves Vandenbrouck

Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios.

Frontiers in microbiology

Avec: Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Vergès , Marie-Hélène Desmonts , Dalal Werner , Carole Feurer , Bastien Frémaux , Sandrine Guillou , Ngoc-Du Martin Luong , Olivier Rué , Valentin Loux , Monique Zagorec , Stéphane Chaillou , Auteur inconnu

Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates.

mSphere

Avec: Jeanne Laurentie , Valentin Loux , Christelle Hennequet-Antier , Emilie Chambellon , Julien Deschamps , Angélina Trotereau , Sylviane Furlan , Claire Darrigo , Florent Kempf , Julie Lao , Marine Milhes , Céline Roques , Benoit Quinquis , Céline Vandecasteele , Roxane Boyer , Olivier Bouchez , Francis Repoila , Jean Le Guennec , Hélène Chiapello , Romain Briandet , Emmanuelle Helloin , Catherine Schouler , Isabelle Kempf , Pascale Serror

MilkOligoThesaurus, a dataset of mammalian milk oligosaccharide synonyms.

Data in brief

Avec: Mathilde Rumeau , François Fenaille , Agnès Girard , Valentin Loux , Mouhamadou Ba , Claire Nédellec , Louise Deléger , Robert Bossy , Sophie Aubin , Christelle Knudsen , Sylvie Combes

Complete Genome Sequence of Staphylococcus epidermidis PH1-28, Isolated from the Forehead of a Hyperseborrheic Donor.

Microbiology resource announcements

Avec: Pascal Hilaire , Leslie Landemaine , Sandy Contreras , Hélène Blanquart-Goudezeune , Patricia Siguier , François Cornet , Hélène Chiapello , Valentin Loux , Cécile Clavaud , Stanislas C Morand

Genome Sequence of Bacillus velezensis P1, a Strain Isolated from a Biofilm Captured on a Pig Farm Building.

Microbiology resource announcements

Avec: Virgile Guéneau , Jean-Christophe Piard , Bastien Frayssinet , Valentin Loux , Hélène Chiapello , Julia Plateau-Gonthier , Mathieu Castex , Romain Briandet

Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on

Microorganisms

Avec: Marie Frétin , Amaury Gérard , Anne Ferlay , Bruno Martin , Solange Buchin , Sébastien Theil , Etienne Rifa , Valentin Loux , Olivier Rué , Christophe Chassard , Céline Delbès

Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics.

Environmental microbiology

Avec: Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur , Laurent Mazéas , Valentin Loux , Théodore Bouchez , Mart Krupovic , Ariane Bize

Genome sequences of four colistin-resistant ESKAPE bacterial strains isolated from patients within the same hospital.

Microbiology resource announcements

Avec: Merve Nur Tunç , Virgile Guéneau , Valentin Loux , Rosa Del Campo , Rut Carballido Lopez , Romain Briandet

Réseau de co-auteurs

Olivier Rué 7 collaborations

Mahendra Mariadassou 4 collaborations

Hélène Chiapello 4 collaborations

Yves Vandenbrouck 3 collaborations

Florence Combes 3 collaborations

Cédric Midoux 3 collaborations

Ariane Bize 3 collaborations

Romain Briandet 3 collaborations

Virginie Brun 2 collaborations

Véronique Martin 2 collaborations

Eric Dugat-Bony 2 collaborations

Etienne Rifa 2 collaborations

Sébastien Theil 2 collaborations

Céline Delbès 2 collaborations

Robert Bossy 2 collaborations

Louise Deléger 2 collaborations

Mouhamadou Ba 2 collaborations

Claire Nédellec 2 collaborations

Simon Poirier 2 collaborations

Ngoc-Du Martin Luong 2 collaborations

Sandrine Guillou 2 collaborations

Monique Zagorec 2 collaborations

Carole Feurer 2 collaborations

Bastien Frémaux 2 collaborations

Gwendoline Coeuret 2 collaborations

Marie-Hélène Desmonts 2 collaborations

Dalal Werner 2 collaborations

Stéphane Chaillou 2 collaborations

Théodore Bouchez 2 collaborations

Virgile Guéneau 2 collaborations

David Christiany 1 collaboration

Lien Nguyen 1 collaboration

Maxime Branger 1 collaboration

Thierry Cochard 1 collaboration

Maria Laura Boschiroli 1 collaboration

Franck Biet 1 collaboration

Lorraine Michelet 1 collaboration

Noémie Pascault 1 collaboration

Jacques Pédron 1 collaboration

Jennifer Tambosco 1 collaboration

Cécile Bernard 1 collaboration

Jean-François Humbert 1 collaboration

Julie Leloup 1 collaboration

Franciele Pereira Camargo 1 collaboration

Isabel Kimiko Sakamoto 1 collaboration

Tiago Palladino Delforno 1 collaboration

Iolanda Cristina Silveira Duarte 1 collaboration

Edson Luiz Silva 1 collaboration

Maria Bernadete Amâncio Varesche 1 collaboration

Sandrine Auger 1 collaboration

Virginie Mournetas 1 collaboration

Philippe Langella 1 collaboration

Jean-Marc Chatel 1 collaboration

Françoise Irlinger 1 collaboration

Cécile Neuvéglise 1 collaboration

Pierre Renault 1 collaboration

Corinne Cruaud 1 collaboration

Frederick Gavory 1 collaboration

Valérie Barbe 1 collaboration

Ronan Lasbleiz 1 collaboration

Frédéric Gaucheron 1 collaboration

Céline Spelle 1 collaboration

Jeffrey K Cornuault 1 collaboration

Elisabeth Moncaut 1 collaboration

Aurélie Mathieu 1 collaboration

Harry Sokol 1 collaboration

Marie-Agnès Petit 1 collaboration

Marianne De Paepe 1 collaboration

Harivony Rakotoarivonina 1 collaboration

Christelle Doliwa 1 collaboration

Caroline Rémond 1 collaboration

Pascal Bonnarme 1 collaboration

Sébastien Fraud 1 collaboration

Jessie Catellote 1 collaboration

Anne-Sophie Sarthou 1 collaboration

Nadège Bel 1 collaboration

Sarah Chuzeville 1 collaboration

Sandra Helinck 1 collaboration

Sandra Dérozier 1 collaboration

Estelle Chaix 1 collaboration

Olivier Harlé 1 collaboration

Hélène Falentin 1 collaboration

Valérie Anthoine 1 collaboration

Jeanne-Marie Membré 1 collaboration

Nicolas Moriceau 1 collaboration

Sandrine Rezé 1 collaboration

Sabine Jeuge 1 collaboration

Emeline Robieu 1 collaboration

Marie Champomier-Vergès 1 collaboration

Emilie Cauchie 1 collaboration

Georges Daube 1 collaboration

Nicolas Korsak 1 collaboration

Louis Coroller 1 collaboration

Noémie Desriac 1 collaboration

Rodérick Gohier 1 collaboration

Marie-Hélène Dohollou 1 collaboration

Tatiana Defosse 1 collaboration

Tiago P Delforno 1 collaboration

Thais Z Macedo 1 collaboration

Gileno V Lacerda 1 collaboration

Maria B A Varesche 1 collaboration

Valéria M Oliveira 1 collaboration

Marie-Christine Champomier-Vergès 1 collaboration

None None 1 collaboration

Jeanne Laurentie 1 collaboration

Christelle Hennequet-Antier 1 collaboration

Emilie Chambellon 1 collaboration

Julien Deschamps 1 collaboration

Angélina Trotereau 1 collaboration

Sylviane Furlan 1 collaboration

Claire Darrigo 1 collaboration

Florent Kempf 1 collaboration

Julie Lao 1 collaboration

Marine Milhes 1 collaboration

Céline Roques 1 collaboration

Benoit Quinquis 1 collaboration

Céline Vandecasteele 1 collaboration

Roxane Boyer 1 collaboration

Olivier Bouchez 1 collaboration

Francis Repoila 1 collaboration

Jean Le Guennec 1 collaboration

Emmanuelle Helloin 1 collaboration

Catherine Schouler 1 collaboration

Isabelle Kempf 1 collaboration

Pascale Serror 1 collaboration

Mathilde Rumeau 1 collaboration

François Fenaille 1 collaboration

Agnès Girard 1 collaboration

Sophie Aubin 1 collaboration

Christelle Knudsen 1 collaboration

Sylvie Combes 1 collaboration

Pascal Hilaire 1 collaboration

Leslie Landemaine 1 collaboration

Sandy Contreras 1 collaboration

Hélène Blanquart-Goudezeune 1 collaboration

Patricia Siguier 1 collaboration

François Cornet 1 collaboration

Cécile Clavaud 1 collaboration

Stanislas C Morand 1 collaboration

Jean-Christophe Piard 1 collaboration

Bastien Frayssinet 1 collaboration

Julia Plateau-Gonthier 1 collaboration

Mathieu Castex 1 collaboration

Marie Frétin 1 collaboration

Amaury Gérard 1 collaboration

Anne Ferlay 1 collaboration

Bruno Martin 1 collaboration

Solange Buchin 1 collaboration

Christophe Chassard 1 collaboration

Vuong Quoc Hoang Ngo 1 collaboration

François Enault 1 collaboration

Olivier Chapleur 1 collaboration

Laurent Mazéas 1 collaboration

Mart Krupovic 1 collaboration

Merve Nur Tunç 1 collaboration

Rosa Del Campo 1 collaboration

Rut Carballido Lopez 1 collaboration