Where are we going with genomics in plant pathogenic bacteria?

Bacteria / genetics Genome, Bacterial Genomics / methods Host-Pathogen Interactions Plants / microbiology

Journal

Genomics
ISSN: 1089-8646
Titre abrégé: Genomics
Pays: United States
ID NLM: 8800135

Informations de publication

Date de publication:
07 2019
Historique:
received: 15 03 2018
accepted: 13 04 2018
pubmed: 22 4 2018
medline: 31 12 2019
entrez: 22 4 2018
Statut: ppublish

Résumé

Genome sequencing is commonly used in research laboratories right now thanks to the rise of high-throughput sequencing with higher speed and output-to-cost ratios. Here, we summarized the application of genomics in different aspects of plant bacterial pathosystems. Genomics has been used in studying the mechanisms of plant-bacteria interactions, and host specificity. It also helps with taxonomy, study of non-cultured bacteria, identification of causal agent, single cell sequencing, population genetics, and meta-transcriptomic. Overall, genomics has significantly improved our understanding of plant-microbe interaction.

Identifiants

DOI: 10.1016/j.ygeno.2018.04.011 PMID: 29678682
pubmed: 29678682
pii: S0888-7543(18)30169-1
doi: 10.1016/j.ygeno.2018.04.011
pii:
doi:

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S. Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

729-736

Informations de copyright

Copyright © 2018 Elsevier Inc. All rights reserved.

Auteurs

Jin Xu (J)

Citrus Research and Education Center, Department of Plant Pathology, University of Florida/Institute of Food and Agricultural Sciences, Lake Alfred, FL, USA.

Nian Wang (N)

China-USA Citrus Huanglongbing Joint Laboratory (A joint laboratory of The University of Florida's Institute of Food and Agricultural Sciences and Gannan Normal University), National Navel Orange Engineering Research Center, Gannan Normal University, Ganzhou, Jiangxi, China; Citrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida/Institute of Food and Agricultural Sciences, Lake Alfred, FL, USA. Electronic address: nianwang@ufl.edu.

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Classifications MeSH

questionsmedicales.fr › Bactéries › Where are we going with genomics in plant...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome bactérien › Where are we going with genomics in plant...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Where are we going with genomics in plant...
questionsmedicales.fr › Phénomènes biologiques › Interactions hôte-microbes › Interactions hôte-pathogène › Where are we going with genomics in plant...
questionsmedicales.fr › Eucaryotes › Plantes › Where are we going with genomics in plant...