The ARID1B spectrum in 143 patients: from nonsyndromic intellectual disability to Coffin-Siris syndrome.


Journal

Genetics in medicine : official journal of the American College of Medical Genetics
ISSN: 1530-0366
Titre abrégé: Genet Med
Pays: United States
ID NLM: 9815831

Informations de publication

Date de publication:
06 2019
Historique:
received: 10 07 2018
accepted: 26 09 2018
pubmed: 24 10 2018
medline: 14 2 2020
entrez: 24 10 2018
Statut: ppublish

Résumé

Pathogenic variants in ARID1B are one of the most frequent causes of intellectual disability (ID) as determined by large-scale exome sequencing studies. Most studies published thus far describe clinically diagnosed Coffin-Siris patients (ARID1B-CSS) and it is unclear whether these data are representative for patients identified through sequencing of unbiased ID cohorts (ARID1B-ID). We therefore sought to determine genotypic and phenotypic differences between ARID1B-ID and ARID1B-CSS. In parallel, we investigated the effect of different methods of phenotype reporting. Clinicians entered clinical data in an extensive web-based survey. 79 ARID1B-CSS and 64 ARID1B-ID patients were included. CSS-associated dysmorphic features, such as thick eyebrows, long eyelashes, thick alae nasi, long and/or broad philtrum, small nails and small or absent fifth distal phalanx and hypertrichosis, were observed significantly more often (p < 0.001) in ARID1B-CSS patients. No other significant differences were identified. There are only minor differences between ARID1B-ID and ARID1B-CSS patients. ARID1B-related disorders seem to consist of a spectrum, and patients should be managed similarly. We demonstrated that data collection methods without an explicit option to report the absence of a feature (such as most Human Phenotype Ontology-based methods) tended to underestimate gene-related features.

Identifiants

pubmed: 30349098
doi: 10.1038/s41436-018-0330-z
pii: S1098-3600(21)01646-4
pmc: PMC6752273
doi:

Substances chimiques

ARID1B protein, human 0
Chromosomal Proteins, Non-Histone 0
DNA-Binding Proteins 0
Transcription Factors 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1295-1307

Subventions

Organisme : Medical Research Council
ID : MC_PC_16018
Pays : United Kingdom

Commentaires et corrections

Type : ErratumIn
Type : CommentIn
Type : CommentIn

Références

Am J Med Genet A. 2014 Dec;164A(12):3126-31
pubmed: 25250687
BMC Genomics. 2015 Sep 16;16:701
pubmed: 26376624
Am J Med Genet A. 2017 Sep;173(9):2478-2484
pubmed: 28691782
Eur J Hum Genet. 2017 Feb;25(2):176-182
pubmed: 27848944
Nat Genet. 2012 Mar 18;44(4):376-8
pubmed: 22426308
Intractable Rare Dis Res. 2016 Aug;5(3):222-6
pubmed: 27672547
Eur J Hum Genet. 2011 Jun;19(6):727-31
pubmed: 21448237
Orphanet J Rare Dis. 2014 Mar 27;9:43
pubmed: 24674232
Hum Mutat. 2013 Nov;34(11):1519-28
pubmed: 23929686
Nat Genet. 2012 Mar 18;44(4):379-80
pubmed: 22426309
Lancet. 2015 Apr 4;385(9975):1305-14
pubmed: 25529582
Am J Hum Genet. 2012 Mar 9;90(3):565-72
pubmed: 22405089
Clin Genet. 2012 Sep;82(3):248-55
pubmed: 21801163
Clin Genet. 2014 Jun;85(6):548-54
pubmed: 23815551
Am J Hum Genet. 2009 Apr;84(4):524-33
pubmed: 19344873
Hum Mutat. 2013 Aug;34(8):1057-65
pubmed: 23636887
Brain. 2016 Nov 1;139(11):e64
pubmed: 27474218
Am J Med Genet A. 2014 Jul;164A(7):1857-9
pubmed: 24700687
Brain Dev. 2015 May;37(5):527-36
pubmed: 25249037
Am J Med Genet A. 2016 Jan;170A(1):156-61
pubmed: 26395437
Am J Med Genet A. 2016 Dec;170(12):3313-3318
pubmed: 27570168
Am J Med Genet C Semin Med Genet. 2014 Sep;166C(3):350-66
pubmed: 25169151
Am J Med Genet C Semin Med Genet. 2014 Sep;166C(3):276-89
pubmed: 25169814
BMC Pediatr. 2013 Apr 20;13:59
pubmed: 23601190
Am J Med Genet C Semin Med Genet. 2014 Sep;166C(3):333-49
pubmed: 25195934
Eur J Hum Genet. 2014 Nov;22(11):1327-9
pubmed: 24569609
Intractable Rare Dis Res. 2015 Feb;4(1):17-23
pubmed: 25674384
BMC Genomics. 2017 May 24;18(1):403
pubmed: 28539120
Genet Med. 2013 Jun;15(6):478-81
pubmed: 23258348
J Clin Res Pediatr Endocrinol. 2009;1(3):105-15
pubmed: 21274395
Nature. 2015 Mar 12;519(7542):223-8
pubmed: 25533962
Elife. 2017 Jul 11;6:
pubmed: 28695822
Am J Med Genet A. 2017 May;173(5):1440-1443
pubmed: 28323383
Am J Med Genet A. 2008 Feb 1;146A(3):384-8
pubmed: 18203175
Hum Mol Genet. 2013 Dec 20;22(25):5121-35
pubmed: 23906836
Am J Hum Genet. 2015 Jun 4;96(6):913-25
pubmed: 26046366
Cells. 2016 Dec 14;5(4):
pubmed: 27983621
Am J Med Genet A. 2016 Dec;170(12):3249-3252
pubmed: 27511161
Cytogenet Genome Res. 2011;132(3):135-43
pubmed: 21042007

Auteurs

Pleuntje J van der Sluijs (PJ)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Sandra Jansen (S)

Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.

Samantha A Vergano (SA)

Division of Medical Genetics and Metabolism, Children's Hospital of the King's Daughters, Norfolk, VA, USA.

Miho Adachi-Fukuda (M)

Department of Pediatrics, St. Marianna University School of Medicine, Kanagawa, Japan.

Yasemin Alanay (Y)

School of Medicine, Department of Pediatrics, Pediatric Genetics Unit, Acibadem University, Istanbul, Turkey.

Adila AlKindy (A)

Department of Genetics, Sultan Qaboos University Hospital, Muscat, Oman.

Anwar Baban (A)

Pediatric Cardiology and Cardiac Surgery Department, Bambino Gesù Children Hospital and Research Institute, IRCCS, Rome, Italy.

Allan Bayat (A)

Copenhagen University Hospital Hvidovre, Copenhagen, Denmark.

Stefanie Beck-Wödl (S)

Department of Molecular Genetics and Applied Genomics, University Hospital Tübingen, Tübingen, Germany.

Katherine Berry (K)

Department of Medical Genetics, Shodair Hospital, Helena, MT, USA.

Emilia K Bijlsma (EK)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Levinus A Bok (LA)

Department of Pediatrics, Màxima Medical Centre, Veldhoven, The Netherlands.

Alwin F J Brouwer (AFJ)

Department of Paediatrics, Nij Smellinghe Hospital, Drachten, The Netherlands.

Ineke van der Burgt (I)

Department of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.

Philippe M Campeau (PM)

Department of Pediatrics, CHU Sainte-Justine and University of Montreal, Montreal, QC, Canada.

Natalie Canham (N)

North West Thames Regional Genetics Service, Northwick Park Hospital, Harrow, United Kingdom.
Cheshire and Merseyside Regional Genetics Service, Liverpool Women's Hospital, Crown Street, Liverpool, United Kingdom.

Krystyna Chrzanowska (K)

Department of Medical Genetics, The Children's Memorial Health Institute, Warsaw, Poland.

Yoyo W Y Chu (YWY)

Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, SAR, China.

Brain H Y Chung (BHY)

Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, SAR, China.

Karin Dahan (K)

Center for Human Genetics, Institute of Pathology and Genetics, Gosselies, Belgium.

Marjan De Rademaeker (M)

Center for Medical Genetics, Vrije Universiteit Brussels, Brussels, Belgium.

Anne Destree (A)

Center for Human Genetics, Institute of Pathology and Genetics, Gosselies, Belgium.

Tracy Dudding-Byth (T)

Hunter Genetics and University of Newcastle, GrowUpWell Priority Research Centre, Newcastle, Australia.

Rachel Earl (R)

Department of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, USA.

Nursel Elcioglu (N)

Department of Pediatric Genetics, Marmara University Pendik Hospital, Istanbul, Turkey.

Ellen R Elias (ER)

Department of Pediatrics and Genetics, University of Colorado Denver School of Medicine, Aurora, CO, USA.

Christina Fagerberg (C)

Department of Clinical Genetics, Odense University Hospital, Odense, Denmark.

Alice Gardham (A)

North West Thames Regional Genetics Service, Northwick Park Hospital, Harrow, United Kingdom.

Blanca Gener (B)

Department of Genetics, Cruces University Hospital, Biocruces Health Research Institute, Vizcayam, Spain.

Erica H Gerkes (EH)

University of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.

Ute Grasshoff (U)

Department of Molecular Genetics and Applied Genomics, University Hospital Tübingen, Tübingen, Germany.

Arie van Haeringen (A)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Karin R Heitink (KR)

Department of Rehabilitation Medicine, Leiden University Medical Center, Leiden, The Netherlands.

Johanna C Herkert (JC)

University of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.

Nicolette S den Hollander (NS)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Denise Horn (D)

Institute for Medical Genetics and Human Genetics, Charité Universitätsmedizin, Berlin, Germany.

David Hunt (D)

Wessex Clinical Genetics Service, Princess Anne Hospital, Southampton, United Kingdom.

Sarina G Kant (SG)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Mitsuhiro Kato (M)

Department of Pediatrics, Showa University School of Medicine, Tokyo, Japan.

Hülya Kayserili (H)

Medical Genetics Department, Koç University School of Medicine (KUSoM), İstanbul, Turkey.

Rogier Kersseboom (R)

Department of Clinical Genetics, Sophia Children's Hospital, Erasmus MC, Rotterdam, The Netherlands.

Esra Kilic (E)

Department of Pediatric Genetics, Hematology Oncology Research & Training Children's Hospital, Ankara, Turkey.

Malgorzata Krajewska-Walasek (M)

Department of Medical Genetics, The Children's Memorial Health Institute, Warsaw, Poland.

Kylin Lammers (K)

Department of Medical Genetics, Dayton Children's Hospital, Dayton, OH, USA.

Lone W Laulund (LW)

Department of Paediatrics, Odense University Hospital, Odense, Denmark.

Damien Lederer (D)

Center for Human Genetics, Institute of Pathology and Genetics, Gosselies, Belgium.

Melissa Lees (M)

Department of Clinical Genetics, Great Ormond Street Hospital NHS Foundation Trust, London, United Kingdom.

Vanesa López-González (V)

Sección de Genética Médica, Servicio de Pediatria, Hospital Clinico Universitario Virgen de la Arrixaca, IMIB-Arrixaca, CIBERER-ISCIII, Murcia, Spain.

Saskia Maas (S)

Department of Clinical Genetics, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

Grazia M S Mancini (GMS)

Department of Clinical Genetics, Sophia Children's Hospital, Erasmus MC, Rotterdam, The Netherlands.

Carlo Marcelis (C)

Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.

Francisco Martinez (F)

Unidad de Genética, Hospital Universitario y Politécnico La Fe, Valencia, Spain.

Isabelle Maystadt (I)

Center for Human Genetics, Institute of Pathology and Genetics, Gosselies, Belgium.

Marianne McGuire (M)

Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.

Shane McKee (S)

Northern Ireland Regional Genetics Centre, Belfast City Hospital, Belfast, Ireland.

Sarju Mehta (S)

East Anglian Regional Genetics Service, Cambridge University Hospitals NHS Foundation Trust, Addenbrooke's Hospital, Cambridge, United Kingdom.

Kay Metcalfe (K)

Manchester Centre for Genomic Medicine, Division of Evolution and Genomic Sciences, St Mary's Hospital, Manchester University Hospitals NHS Foundation Trust Manchester Academic Health Sciences Centre, Manchester, United Kingdom.

Jeff Milunsky (J)

Center for Human Genetics Inc, Cambridge, MA, USA.

Seiji Mizuno (S)

Department of Pediatrics, Central Hospital, Aichi Human Service Center, Kasugai, Aichi, Japan.

John B Moeschler (JB)

Department of Pediatrics, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.

Christian Netzer (C)

Institute of Human Genetics, University Hospital of Cologne, Cologne, Germany.

Charlotte W Ockeloen (CW)

Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.

Barbara Oehl-Jaschkowitz (B)

Gemeinschaftspraxis für Humangenetik Homburg/Saar, Homburg, Germany.

Nobuhiko Okamoto (N)

Department of Medical Genetics, Osaka Women's and Children's Hospital, Osaka, Japan.

Sharon N M Olminkhof (SNM)

Willem Alexander Children's Hospital, Leiden University Medical Center, Leiden, The Netherlands.

Carmen Orellana (C)

Unidad de Genética, Hospital Universitario y Politécnico La Fe, Valencia, Spain.

Laurent Pasquier (L)

CRMR Déficiences intellectuelles, Service de Génétique Médicale, CLAD Ouest CHU Hôpital Sud, Rennes, France.

Caroline Pottinger (C)

All Wales Medical Genetics Service, Glan Clwyd Hospital, Rhyl, United Kingdom.

Vera Riehmer (V)

Institute of Human Genetics, University Hospital of Cologne, Cologne, Germany.

Stephen P Robertson (SP)

Dunedin School of Medicine, University of Otago, Dunedin, New Zealand.

Maian Roifman (M)

Division of Clinical and Metabolic Genetics, Department of Paediatrics, The Hospital for Sick Children, University of Toronto, Toronto, ON, Canada.
The Prenatal Diagnosis and Medical Genetics Program, Department of Obstetrics and Gynecology, Mount Sinai Hospital, Toronto, ON, Canada.

Caroline Rooryck (C)

Department of Medical Genetics, CHU Bordeaux, Bordeaux, France.

Fabienne G Ropers (FG)

Department of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands.

Monica Rosello (M)

Unidad de Genética, Hospital Universitario y Politécnico La Fe, Valencia, Spain.

Claudia A L Ruivenkamp (CAL)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Mahmut S Sagiroglu (MS)

Genpute Computation Technologies Company, Istanbul, Turkey.

Suzanne C E H Sallevelt (SCEH)

Department of Clinical Genetics and GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands.

Amparo Sanchis Calvo (A)

Servicio de Pediatría, Hospital Universitario Doctor Peset, Valencia, Spain.

Pelin O Simsek-Kiper (PO)

Department of Pediatric Genetics, Ihsan Dogramaci Children's Hospital, Hacettepe University School of Medicine, Ankara, Turkey.

Gabriela Soares (G)

Jacinto de Magalhães Medical Genetics Center, Centro Hospitalar do Porto, Porto, Portugal.

Lucia Solaeche (L)

Departamento de neurometabólicas, Hospital Universitario Son Espases, Palma de Mallorca, Spain.

Fatma Mujgan Sonmez (FM)

Karadeniz Technical University, Faculty of Medicine, Dept of Child Neurology, Retired Professor, Trabzon, Turkey.

Miranda Splitt (M)

Northern Genetics Service, Institute of Genetics Medicine, Newcastle upon Tyne, United Kingdom.

Duco Steenbeek (D)

Department of Rehabilitation Medicine, Leiden University Medical Center, Leiden, The Netherlands.

Alexander P A Stegmann (APA)

Department of Clinical Genetics and GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands.

Constance T R M Stumpel (CTRM)

Department of Clinical Genetics and GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands.

Saori Tanabe (S)

Division of Pediatrics, Yamagata Prefectural and Sakata Munici pal Hospital Organization Nihon-Kai General Hospital, Sakata, Japan.

Eyyup Uctepe (E)

Enva Engineering, Ankara, Turkey.

G Eda Utine (GE)

Department of Pediatric Genetics, Ihsan Dogramaci Children's Hospital, Hacettepe University School of Medicine, Ankara, Turkey.

Hermine E Veenstra-Knol (HE)

University of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands.

Sunita Venkateswaran (S)

Division of Neurology, Department of Pediatrics, Children's Hospital of Eastern Ontario, University of Ottawa, Ottawa, ON, Canada.

Catheline Vilain (C)

Department of Genetics, Hôpital Universitaire des Enfants Reine Fabiola, ULB Center of Medical Genetics, Université Libre de Bruxelles, Brussels, Belgium.
Department of Genetics, Hôpital Erasme. ULB Center of Medical Genetics, Université Libre de Bruxelles, Brussels, Belgium.

Catherine Vincent-Delorme (C)

Service de génétique clinique Guy Fontaine, CHRU de Lille-Hôpital Jeanne de Flandre, Lille, France.

Anneke T Vulto-van Silfhout (AT)

Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.

Patricia Wheeler (P)

Division of Genetics, Arnold Palmer Hospital, Orlando, FL, USA.

Golder N Wilson (GN)

KinderGenome Genetics, Medical City Hospital Dallas, Dallas, TX, USA.

Louise C Wilson (LC)

Department of Clinical Genetics, Great Ormond Street Hospital NHS Foundation Trust, London, United Kingdom.

Bernd Wollnik (B)

Institute of Human Genetics, University Medical Center Göttingen, Göttingen, Germany.

Tomoki Kosho (T)

Center for Medical Genetics, Shinshu University Hospital, Matsumoto, Japan.

Dagmar Wieczorek (D)

Institute of Human Genetics, Medical Faculty, Heinrich-Heine-University, Düsseldorf, Germany.

Evan Eichler (E)

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.

Rolph Pfundt (R)

Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.

Bert B A de Vries (BBA)

Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.

Jill Clayton-Smith (J)

Manchester Centre for Genomic Medicine, Division of Evolution and Genomic Sciences, St Mary's Hospital, Manchester University Hospitals NHS Foundation Trust Manchester Academic Health Sciences Centre, Manchester, United Kingdom.

Gijs W E Santen (GWE)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands. santen@lumc.nl.

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Classifications MeSH