The ARID1B spectrum in 143 patients: from nonsyndromic intellectual disability to Coffin-Siris syndrome.
Abnormalities, Multiple
/ genetics
Adolescent
Adult
Child
Child, Preschool
Chromosomal Proteins, Non-Histone
/ genetics
DNA-Binding Proteins
/ genetics
Exome
Face
/ abnormalities
Female
Genetic Association Studies
/ methods
Genetic Variation
/ genetics
Hand Deformities, Congenital
/ genetics
Humans
Infant
Infant, Newborn
Intellectual Disability
/ genetics
Male
Micrognathism
/ genetics
Middle Aged
Mutation
Neck
/ abnormalities
Penetrance
Transcription Factors
/ genetics
ARID1B
Coffin–Siris syndrome
bias
intellectual disability
Journal
Genetics in medicine : official journal of the American College of Medical Genetics
ISSN: 1530-0366
Titre abrégé: Genet Med
Pays: United States
ID NLM: 9815831
Informations de publication
Date de publication:
06 2019
06 2019
Historique:
received:
10
07
2018
accepted:
26
09
2018
pubmed:
24
10
2018
medline:
14
2
2020
entrez:
24
10
2018
Statut:
ppublish
Résumé
Pathogenic variants in ARID1B are one of the most frequent causes of intellectual disability (ID) as determined by large-scale exome sequencing studies. Most studies published thus far describe clinically diagnosed Coffin-Siris patients (ARID1B-CSS) and it is unclear whether these data are representative for patients identified through sequencing of unbiased ID cohorts (ARID1B-ID). We therefore sought to determine genotypic and phenotypic differences between ARID1B-ID and ARID1B-CSS. In parallel, we investigated the effect of different methods of phenotype reporting. Clinicians entered clinical data in an extensive web-based survey. 79 ARID1B-CSS and 64 ARID1B-ID patients were included. CSS-associated dysmorphic features, such as thick eyebrows, long eyelashes, thick alae nasi, long and/or broad philtrum, small nails and small or absent fifth distal phalanx and hypertrichosis, were observed significantly more often (p < 0.001) in ARID1B-CSS patients. No other significant differences were identified. There are only minor differences between ARID1B-ID and ARID1B-CSS patients. ARID1B-related disorders seem to consist of a spectrum, and patients should be managed similarly. We demonstrated that data collection methods without an explicit option to report the absence of a feature (such as most Human Phenotype Ontology-based methods) tended to underestimate gene-related features.
Identifiants
pubmed: 30349098
doi: 10.1038/s41436-018-0330-z
pii: S1098-3600(21)01646-4
pmc: PMC6752273
doi:
Substances chimiques
ARID1B protein, human
0
Chromosomal Proteins, Non-Histone
0
DNA-Binding Proteins
0
Transcription Factors
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1295-1307Subventions
Organisme : Medical Research Council
ID : MC_PC_16018
Pays : United Kingdom
Commentaires et corrections
Type : ErratumIn
Type : CommentIn
Type : CommentIn
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