Database establishment for the secondary fungal DNA barcode

Biodiversity DNA Barcoding, Taxonomic / methods DNA, Fungal / analysis DNA, Ribosomal Spacer / genetics Databases, Factual Fungi / classification Peptide Elongation Factor 1 / genetics
base de données d’un code à barres fongique secondaire codage à barres de l’ADN fongique facteur d’élongation de la traduction 1α fungal DNA barcoding secondary fungal DNA barcode database translational elongation factor 1α

Journal

Genome
ISSN: 1480-3321
Titre abrégé: Genome
Pays: Canada
ID NLM: 8704544

Informations de publication

Date de publication:
Mar 2019
Historique:
pubmed: 23 11 2018
medline: 6 8 2019
entrez: 23 11 2018
Statut: ppublish

Résumé

With new or emerging fungal infections, human and animal fungal pathogens are a growing threat worldwide. Current diagnostic tools are slow, non-specific at the species and subspecies levels, and require specific morphological expertise to accurately identify pathogens from pure cultures. DNA barcodes are easily amplified, universal, short species-specific DNA sequences, which enable rapid identification by comparison with a well-curated reference sequence collection. The primary fungal DNA barcode, ITS region, was introduced in 2012 and is now routinely used in diagnostic laboratories. However, the ITS region only accurately identifies around 75% of all medically relevant fungal species, which has prompted the development of a secondary barcode to increase the resolution power and suitability of DNA barcoding for fungal disease diagnostics. The translational elongation factor 1α (

Identifiants

DOI: 10.1139/gen-2018-0083 PMID: 30465691
pubmed: 30465691
doi: 10.1139/gen-2018-0083
doi:

Substances chimiques

DNA, Fungal 0
DNA, Ribosomal Spacer 0
Peptide Elongation Factor 1 0

Types de publication

Journal Article

Langues

eng

Pagination

160-169

Auteurs

Wieland Meyer (W)

a Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Faculty of Medicine and Health, Sydney School of Medicine, Westmead Clinical School, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Hospital (Research and Education Network), Westmead Institute for Medical Research, Westmead, NSW, Australia.

Laszlo Irinyi (L)

a Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Faculty of Medicine and Health, Sydney School of Medicine, Westmead Clinical School, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Hospital (Research and Education Network), Westmead Institute for Medical Research, Westmead, NSW, Australia.

Minh Thuy Vi Hoang (MTV)

a Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Faculty of Medicine and Health, Sydney School of Medicine, Westmead Clinical School, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Hospital (Research and Education Network), Westmead Institute for Medical Research, Westmead, NSW, Australia.

Vincent Robert (V)

b Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.

Dea Garcia-Hermoso (D)

c Institut Pasteur, National Reference Center for Invasive Mycoses and Antifungals (NRCMA), Molecular Mycology Unit, CNRS UMR2000, Paris, France.

Marie Desnos-Ollivier (M)

c Institut Pasteur, National Reference Center for Invasive Mycoses and Antifungals (NRCMA), Molecular Mycology Unit, CNRS UMR2000, Paris, France.

Chompoonek Yurayart (C)

d Mycology Unit, Department of Microbiology, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
e Department of Veterinary Microbiology and Immunology, Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.

Chi-Ching Tsang (CC)

f Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong.

Chun-Yi Lee (CY)

f Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong.

Patrick C Y Woo (PCY)

f Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong.

Ivan Mikhailovich Pchelin (IM)

g Laboratory of Molecular Genetic Microbiology, Kashkin Research Institute of Medical Mycology, I.I. Mechnikov North-Western State Medical University, St Petersburg, Russia.

Silke Uhrlaß (S)

h Laboratory of Medical Microbiology, Partnership Dr. C. Krueger & Prof. Dr. P. Nenoff, Roetha OT Moelbis, Germany.

Pietro Nenoff (P)

h Laboratory of Medical Microbiology, Partnership Dr. C. Krueger & Prof. Dr. P. Nenoff, Roetha OT Moelbis, Germany.

Ariya Chindamporn (A)

d Mycology Unit, Department of Microbiology, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.

Sharon Chen (S)

a Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Faculty of Medicine and Health, Sydney School of Medicine, Westmead Clinical School, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Hospital (Research and Education Network), Westmead Institute for Medical Research, Westmead, NSW, Australia.
i Centre for Infectious Diseases and Microbiology Laboratory Services, ICPMR, Westmead Hospital, Westmead, NSW, Australia.

Paul D N Hebert (PDN)

j Department of Integrative Biology and Director of the Biodiversity Institute of Ontario at the University of Guelph, Guelph, ON, Canada.

Tania C Sorrell (TC)

a Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Faculty of Medicine and Health, Sydney School of Medicine, Westmead Clinical School, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Hospital (Research and Education Network), Westmead Institute for Medical Research, Westmead, NSW, Australia.

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Classifications MeSH

questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › Database establishment for the secondary...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Codage à barres de l'ADN pour la taxonomie › Database establishment for the secondary...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ADN › ADN fongique › Database establishment for the secondary...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ADN › ADN ribosomique › Espaceur de l'ADN ribosomique › Database establishment for the secondary...
questionsmedicales.fr › Sciences de l'information › Mémorisation et recherche des informations › Bases de données comme sujet › Bases de données factuelles › Database establishment for the secondary...
questionsmedicales.fr › Eucaryotes › Champignons › Database establishment for the secondary...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Protéines ribosomiques › Facteurs élongation chaîne peptidique › Facteurs d'élongation liés à la GTP phosphohydrolase › Facteur-1 d'élongation de la chaîne peptidique › Database establishment for the secondary...