Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida.

DNA barcoding Porifera Spongilida Spongillida classification codage à barres de l’ADN code à barres minimaliste freshwater sponges minimalist barcode éponges d’eau douce

Journal

Genome
ISSN: 1480-3321
Titre abrégé: Genome
Pays: Canada
ID NLM: 8704544

Informations de publication

Date de publication:
Jan 2019
Historique:
pubmed: 18 12 2018
medline: 14 6 2019
entrez: 18 12 2018
Statut: ppublish

Résumé

African sponges, particularly freshwater sponges, are understudied relative to demosponges in most other geographical regions. Freshwater sponges (Spongillida) likely share a common ancestor; however, their evolutionary history, particularly during their radiation into endemic and allegedly cosmopolitan groups, is unclear. Freshwater sponges of at least 58 species of 17 genera and four families are described from Central and Eastern Africa, but the diversity is underestimated due to limited distinguishable morphological features. The discovery of additional cryptic species is very likely with the use of molecular techniques such as DNA barcoding. The Royal Museum of Central Africa (MRAC, Tervuren, Belgium) hosts one of the largest collections of (Central) African freshwater sponge type material. Type specimens in theory constitute ideal targets for molecular taxonomy; however, the success is frequently hampered by DNA degradation and deamination, which are a consequence of suboptimal preservation techniques. Therefore, we genotyped African demosponge holotype material of the MRAC with specific short primers suitable for degenerated tissue and compare the results with the current, morphology-based classification. Our results demonstrate the utility of minimalistic barcodes for identification of sponges, potentially enabling efficient identification of individuals in taxonomic or metabarcoding studies, and highlight inconsistencies in the current freshwater sponge classification.

Identifiants

pubmed: 30557098
doi: 10.1139/gen-2018-0098
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1-10

Auteurs

Dirk Erpenbeck (D)

a Department of Earth & Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.
b GeoBio-CenterLMU, Ludwig-Maximilians-Universität, Munich, Germany.

Markus Steiner (M)

a Department of Earth & Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.

Astrid Schuster (A)

a Department of Earth & Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.

Martin J Genner (MJ)

c School of Biological Sciences, University of Bristol, Bristol, BS8 1TQ, United Kingdom.

Renata Manconi (R)

d Dipartimento di Medicina Veterinaria, Università di Sassari, Sassari, Italy.

Roberto Pronzato (R)

e Dipartimento di Scienze della Terra, dell'Ambiente e della Vita, Università di Genova, Genova, Italy.

Bernhard Ruthensteiner (B)

b GeoBio-CenterLMU, Ludwig-Maximilians-Universität, Munich, Germany.
f SNSB - Bavarian State Collection of Zoology, Munich, Germany.

Didier van den Spiegel (D)

g Royal Museum of Central Africa, Tervuren, Belgium.

Rob W M van Soest (RWM)

h Naturalis Biodiversity Center, Leiden, the Netherlands.

Gert Wörheide (G)

a Department of Earth & Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.
b GeoBio-CenterLMU, Ludwig-Maximilians-Universität, Munich, Germany.
i Bavarian State Collections of Palaeontology and Geology, Munich, Germany.

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