Maximizing Interpretability and Cost-Effectiveness of Surgical Site Infection (SSI) Predictive Models Using Feature-Specific Regularized Logistic Regression on Preoperative Temporal Data.


Journal

Computational and mathematical methods in medicine
ISSN: 1748-6718
Titre abrégé: Comput Math Methods Med
Pays: United States
ID NLM: 101277751

Informations de publication

Date de publication:
2019
Historique:
received: 29 09 2018
accepted: 17 01 2019
entrez: 28 3 2019
pubmed: 28 3 2019
medline: 5 9 2019
Statut: epublish

Résumé

This study describes a novel approach to solve the surgical site infection (SSI) classification problem. Feature engineering has traditionally been one of the most important steps in solving complex classification problems, especially in cases with temporal data. The described novel approach is based on abstraction of temporal data recorded in three temporal windows. Maximum likelihood L1-norm (lasso) regularization was used in penalized logistic regression to predict the onset of surgical site infection occurrence based on available patient blood testing results up to the day of surgery. Prior knowledge of predictors (blood tests) was integrated in the modelling by introduction of penalty factors depending on blood test prices and an early stopping parameter limiting the maximum number of selected features used in predictive modelling. Finally, solutions resulting in higher interpretability and cost-effectiveness were demonstrated. Using repeated holdout cross-validation, the baseline C-reactive protein (CRP) classifier achieved a mean AUC of 0.801, whereas our best full lasso model achieved a mean AUC of 0.956. Best model testing results were achieved for full lasso model with maximum number of features limited at 20 features with an AUC of 0.967. Presented models showed the potential to not only support domain experts in their decision making but could also prove invaluable for improvement in prediction of SSI occurrence, which may even help setting new guidelines in the field of preoperative SSI prevention and surveillance.

Identifiants

pubmed: 30915154
doi: 10.1155/2019/2059851
pmc: PMC6399553
doi:

Substances chimiques

C-Reactive Protein 9007-41-4

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

2059851

Références

N Engl J Med. 2000 Jan 20;342(3):161-7
pubmed: 10639541
Surg Infect (Larchmt). 2002;3 Suppl 1:S37-43
pubmed: 12573038
Lancet. 2003 Nov 22;362(9397):1749-57
pubmed: 14643127
Int J Qual Health Care. 2006 Apr;18(2):127-33
pubmed: 16484315
Ann Thorac Surg. 2006 Dec;82(6):2170-8
pubmed: 17126130
Infect Control Hosp Epidemiol. 2006 Dec;27(12):1347-51
pubmed: 17152033
Br J Cancer. 2009 Apr 21;100(8):1236-9
pubmed: 19319134
Am J Infect Control. 2009 Jun;37(5):387-397
pubmed: 19398246
J Stat Softw. 2010;33(1):1-22
pubmed: 20808728
World J Surg. 2011 May;35(5):1017-25
pubmed: 21350898
Acta Anaesthesiol Scand. 2012 Mar;56(3):339-50
pubmed: 22188223
Ann Surg Oncol. 2012 Dec;19(13):4168-77
pubmed: 22805866
J Hosp Infect. 2013 May;84(1):5-12
pubmed: 23414705
Infect Control Hosp Epidemiol. 2013 Jun;34(6):597-604
pubmed: 23651890
Surg Today. 2014 May;44(5):859-67
pubmed: 23722282
PLoS One. 2013 Jun 27;8(6):e67167
pubmed: 23826224
JAMA Surg. 2013 Sep;148(9):849-58
pubmed: 23864108
Langenbecks Arch Surg. 2013 Oct;398(7):965-71
pubmed: 23982867
Int J Colorectal Dis. 2014 Jan;29(1):23-9
pubmed: 24132530
Int Wound J. 2013 Dec;10 Suppl 1:3-8
pubmed: 24251837
Dtsch Arztebl Int. 2014 Jun 20;111(25):437-45; quiz 446
pubmed: 25008311
J Hosp Infect. 2014 Sep;88(1):40-7
pubmed: 25063012
BMC Infect Dis. 2014 Aug 16;14:444
pubmed: 25132018
Surg Today. 2015 Nov;45(11):1404-10
pubmed: 25480421
Br J Surg. 2015 Apr;102(5):462-79
pubmed: 25703524
PLoS One. 2015 Mar 04;10(3):e0118432
pubmed: 25738806
Wounds. 2010 May;22(5):132-5
pubmed: 25902178
Int J Colorectal Dis. 2015 Jul;30(7):861-73
pubmed: 25935447
J Endovasc Ther. 2015 Aug;22(4):640-6
pubmed: 26092539
Blood. 2015 Jul 30;126(5):582-8
pubmed: 26109205
Colorectal Dis. 2016 Mar;18(3):O111-8
pubmed: 26934854
AMIA Annu Symp Proc. 2015 Nov 05;2015:1164-73
pubmed: 26958256
Dig Surg. 2016;33(4):267-75
pubmed: 27216609
Int J Colorectal Dis. 2016 Sep;31(9):1611-7
pubmed: 27357511
J Hosp Infect. 2016 Aug;93(4):319-22
pubmed: 27388057
Lancet Infect Dis. 2016 Dec;16(12):e276-e287
pubmed: 27816413
J Biomed Inform. 2017 Jan;65:22-33
pubmed: 27825798
Surg Infect (Larchmt). 2017 Aug/Sep;18(6):722-735
pubmed: 28832271
Sci Rep. 2017 Aug 29;7(1):9828
pubmed: 28852175
Am J Surg. 2018 Apr;215(4):651-657
pubmed: 28982517

Auteurs

Primoz Kocbek (P)

Faculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.

Nino Fijacko (N)

Faculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.

Cristina Soguero-Ruiz (C)

Department of Signal Theory and Communications, Telematics and Computing, Universidad Rey Juan Carlos, Fuenlabrada 28943, Spain.
UiT Machine Learning Group, UiT the Arctic University of Norway, Tromsø 9037, Norway.

Karl Øyvind Mikalsen (KØ)

UiT Machine Learning Group, UiT the Arctic University of Norway, Tromsø 9037, Norway.
Department of Mathematics and Statistics, UiT the Arctic University of Norway, Tromsø 9037, Norway.

Uros Maver (U)

Faculty of Medicine, University of Maribor, Maribor 2000, Slovenia.

Petra Povalej Brzan (P)

Faculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.
Faculty of Electrical Engineering and Computer Science, University of Maribor, Maribor 2000, Slovenia.

Andraz Stozer (A)

Faculty of Medicine, University of Maribor, Maribor 2000, Slovenia.

Robert Jenssen (R)

UiT Machine Learning Group, UiT the Arctic University of Norway, Tromsø 9037, Norway.
Department of Physics and Technology, UiT the Arctic University of Norway, Tromsø 9037, Norway.

Stein Olav Skrøvseth (SO)

Department of Mathematics and Statistics, UiT the Arctic University of Norway, Tromsø 9037, Norway.
Norwegian Centre for E-health Research, University Hospital of North Norway, Tromsø 9037, Norway.

Gregor Stiglic (G)

Faculty of Health Sciences, University of Maribor, Maribor 2000, Slovenia.
Faculty of Electrical Engineering and Computer Science, University of Maribor, Maribor 2000, Slovenia.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH