Discovery of Cucumis melo endornavirus by deep sequencing of human stool samples in Brazil.
Endornavirus
Gastroenteritis
Metagenomic
Plant viruses
Virus discovery
Journal
Virus genes
ISSN: 1572-994X
Titre abrégé: Virus Genes
Pays: United States
ID NLM: 8803967
Informations de publication
Date de publication:
Jun 2019
Jun 2019
Historique:
received:
15
09
2018
accepted:
08
02
2019
pubmed:
28
3
2019
medline:
21
6
2019
entrez:
28
3
2019
Statut:
ppublish
Résumé
The nearly complete genome sequences of two Cucumis melo endornavirus (CmEV) strains were obtained using deep sequencing while investigating fecal samples for the presence of gastroenteritis viruses. The Brazilian CmEV BRA/TO-23 (aa positions 116-5027) and BRA/TO-74 (aa positions 26-5057) strains were nearly identical to the reference CmEV CL-01 (USA) and SJ1 (South Korea) strains, showing 97% and 98% of nucleotide and amino acid identity, respectively. Endornaviruses are not known to be associated with human disease and their presence may simply reflect recent dietary consumption. Metagenomic analyses offered an opportunity to identify for the first time in Brazil a newly described endornavirus species.
Identifiants
pubmed: 30915664
doi: 10.1007/s11262-019-01648-0
pii: 10.1007/s11262-019-01648-0
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
332-338Subventions
Organisme : Fundação de Amparo a Pesquisa do Estado de São Paulo
ID : 2015/12944-9
Organisme : Fundação de Amparo à Pesquisa do Estado de São Paulo
ID : 2017/00021-9
Organisme : Fundação de Amparo à Pesquisa do Estado de São Paulo
ID : 2016/01735-2
Organisme : Conselho Nacional de Desenvolvimento Científico e Tecnológico (BR)
ID : 400354/2016-0
Références
PLoS Biol. 2006 Jan;4(1):e3
pubmed: 16336043
Arch Virol. 2006 May;151(5):995-1002
pubmed: 16341944
Virus Res. 2006 Jun;118(1-2):143-9
pubmed: 16417937
Proc Natl Acad Sci U S A. 1981 Nov;78(11):7043-6
pubmed: 16593124
PLoS One. 2012;7(7):e42147
pubmed: 22848734
Mol Biol Evol. 2013 Dec;30(12):2725-9
pubmed: 24132122
J Virol Methods. 2015 Mar;213:139-46
pubmed: 25497414
Nucleic Acids Res. 2015 Apr 20;43(7):e46
pubmed: 25586223
Arch Virol. 2015 Dec;160(12):3153-6
pubmed: 26424198
Virus Res. 2016 Mar 2;214:49-58
pubmed: 26805037
J Pediatr (Rio J). 2016 Sep-Oct;92(5):451-63
pubmed: 27320201
Appetite. 2016 Dec 1;107:494-500
pubmed: 27593453
Virology. 2016 Dec;499:203-211
pubmed: 27677157
PLoS One. 2016 Nov 4;11(11):e0165965
pubmed: 27814394
PLoS One. 2017 May 25;12(5):e0178242
pubmed: 28542624
Emerg Infect Dis. 2017 Oct;23(10):1742-1744
pubmed: 28930031
Sci Total Environ. 2018 Mar 15;618:870-880
pubmed: 29108696
Viruses. 2018 May 13;10(5):
pubmed: 29757259
Sci Rep. 2018 Jun 6;8(1):8686
pubmed: 29875375
Proc Natl Acad Sci U S A. 1994 Sep 13;91(19):9067-71
pubmed: 8090770
J Gen Virol. 1993 May;74 ( Pt 5):893-6
pubmed: 8492094
J Gen Virol. 1998 Oct;79 ( Pt 10):2349-58
pubmed: 9780039