Polymorphisms in Pvkelch12 and gene amplification of Pvplasmepsin4 in Plasmodium vivax from Thailand, Lao PDR and Cambodia.


Journal

Malaria journal
ISSN: 1475-2875
Titre abrégé: Malar J
Pays: England
ID NLM: 101139802

Informations de publication

Date de publication:
02 Apr 2019
Historique:
received: 10 01 2019
accepted: 26 03 2019
entrez: 4 4 2019
pubmed: 4 4 2019
medline: 30 4 2019
Statut: epublish

Résumé

Mutations in Pfkelch13 and Pfplasmepsin2/3 gene amplification are well-established markers for artemisinin and piperaquine resistance in Plasmodium falciparum, a widespread problem in the Greater Mekong Subregion (GMS). The Plasmodium vivax parasite population has experienced varying drug pressure dependent on local drug policies. We investigated the correlation between drug pressure from artemisinins and piperaquine and mutations in the P. vivax orthologous genes Pvkelch12 and Pvplasmepsin4 (Pvpm4), as candidate resistance markers. Blood samples from 734 P. vivax patients were obtained from Thailand (n = 399), Lao PDR (n = 296) and Cambodia (n = 39) between 2007 and 2017. Pvkelch12 and Pvpm4 was amplified and sequenced to assess gene mutations. To assess PvPM4 gene amplification, a Taqman Polymorphisms in Pvkelch12 were rare. Pvkelch12 mutations V552I, K151Q and M124I were observed in 1.0% (7/734) of P. vivax samples. V552I was the most common mutation with a frequency of 0.7% (5/734), most of which (4/5) observed in Ubon Ratchathani, Thailand. Polymorphisms in Pvpm4 were more common, with a frequency of 40.3% (123/305) in 305 samples from Thailand, Lao PDR and Cambodia, but this was not related to the estimated piperaquine drug pressure in these areas (Pearson's χ A novel real-time PCR-based method to assess P. vivax Pvpm4 gene amplification was developed. Drug pressure with artemisinins and piperaquine in the GMS was not clearly related to signatures of selection for mutations in the P. vivax orthologous resistance genes Pvkelch12 and Pvpm4 in areas under investigation. Current resistance of P. vivax to these drugs is unlikely and additional observations including analysis of associated clinical data from these regions could further clarify current findings.

Sections du résumé

BACKGROUND BACKGROUND
Mutations in Pfkelch13 and Pfplasmepsin2/3 gene amplification are well-established markers for artemisinin and piperaquine resistance in Plasmodium falciparum, a widespread problem in the Greater Mekong Subregion (GMS). The Plasmodium vivax parasite population has experienced varying drug pressure dependent on local drug policies. We investigated the correlation between drug pressure from artemisinins and piperaquine and mutations in the P. vivax orthologous genes Pvkelch12 and Pvplasmepsin4 (Pvpm4), as candidate resistance markers.
METHODS METHODS
Blood samples from 734 P. vivax patients were obtained from Thailand (n = 399), Lao PDR (n = 296) and Cambodia (n = 39) between 2007 and 2017. Pvkelch12 and Pvpm4 was amplified and sequenced to assess gene mutations. To assess PvPM4 gene amplification, a Taqman
RESULTS RESULTS
Polymorphisms in Pvkelch12 were rare. Pvkelch12 mutations V552I, K151Q and M124I were observed in 1.0% (7/734) of P. vivax samples. V552I was the most common mutation with a frequency of 0.7% (5/734), most of which (4/5) observed in Ubon Ratchathani, Thailand. Polymorphisms in Pvpm4 were more common, with a frequency of 40.3% (123/305) in 305 samples from Thailand, Lao PDR and Cambodia, but this was not related to the estimated piperaquine drug pressure in these areas (Pearson's χ
CONCLUSIONS CONCLUSIONS
A novel real-time PCR-based method to assess P. vivax Pvpm4 gene amplification was developed. Drug pressure with artemisinins and piperaquine in the GMS was not clearly related to signatures of selection for mutations in the P. vivax orthologous resistance genes Pvkelch12 and Pvpm4 in areas under investigation. Current resistance of P. vivax to these drugs is unlikely and additional observations including analysis of associated clinical data from these regions could further clarify current findings.

Identifiants

pubmed: 30940150
doi: 10.1186/s12936-019-2749-3
pii: 10.1186/s12936-019-2749-3
pmc: PMC6444602
doi:

Substances chimiques

Antimalarials 0
Artemisinins 0
Genetic Markers 0
Protozoan Proteins 0
Quinolines 0
piperaquine A0HV2Q956Y
Aspartic Acid Endopeptidases EC 3.4.23.-
plasmepsin EC 3.4.23.38

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

114

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom

Références

Parasitology. 2001 May;122(Pt 5):497-505
pubmed: 11393822
Am J Trop Med Hyg. 2001 Jan-Feb;64(1-2 Suppl):97-106
pubmed: 11425182
Mol Cell Biol. 2003 Nov;23(22):8137-51
pubmed: 14585973
Trends Parasitol. 2004 May;20(5):233-40
pubmed: 15105024
Genomics Proteomics Bioinformatics. 2006 Aug;4(3):173-81
pubmed: 17127215
Genomics Proteomics Bioinformatics. 2006 Nov;4(4):259-63
pubmed: 17531802
PLoS One. 2007 Oct 31;2(10):e1089
pubmed: 17971853
J Infect Dis. 2008 Nov 15;198(10):1558-64
pubmed: 18808339
PLoS Med. 2010 Feb 09;7(2):e1000209
pubmed: 20161718
PLoS Genet. 2013;9(2):e1003293
pubmed: 23408914
Nature. 2014 Jan 2;505(7481):50-5
pubmed: 24352242
N Engl J Med. 2014 Jul 31;371(5):411-23
pubmed: 25075834
Antimicrob Agents Chemother. 2015 Jan;59(1):730-3
pubmed: 25385109
Nat Genet. 2015 Mar;47(3):226-34
pubmed: 25599401
Lancet Infect Dis. 2015 Apr;15(4):415-21
pubmed: 25704894
Antimicrob Agents Chemother. 2015 May;59(5):2934-7
pubmed: 25712365
Vaccine. 2015 Dec 22;33(52):7506-12
pubmed: 26475447
Lancet Infect Dis. 2016 Mar;16(3):357-65
pubmed: 26774243
N Engl J Med. 2016 Jun 23;374(25):2453-64
pubmed: 27332904
Int J Parasitol. 2017 Feb;47(2-3):87-97
pubmed: 27381764
Am J Trop Med Hyg. 2016 Dec 28;95(6 Suppl):15-34
pubmed: 27402513
Am J Trop Med Hyg. 2016 Dec 7;95(6):1409-1412
pubmed: 27799638
Malar J. 2016 Nov 4;15(1):528
pubmed: 27809837
Lancet Infect Dis. 2017 Feb;17(2):164-173
pubmed: 27818095
Lancet Infect Dis. 2017 Feb;17(2):174-183
pubmed: 27818097
Malar J. 2016 Nov 8;15(1):537
pubmed: 27821166
Lancet Infect Dis. 2017 May;17(5):491-497
pubmed: 28161569
J Infect Dis. 2017 Aug 15;216(4):468-476
pubmed: 28931241
PLoS Negl Trop Dis. 2017 Dec 20;11(12):e0006148
pubmed: 29261647
Nat Commun. 2018 Jul 3;9(1):2585
pubmed: 29968722

Auteurs

Jureeporn Duanguppama (J)

Department of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

Vivek Bhakta Mathema (VB)

Department of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

Rupam Tripura (R)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

Nicholas P J Day (NPJ)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Centre for Tropical Medicine, Churchill Hospital, Oxford, UK.

Mayfong Maxay (M)

Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
Institute of Research and Education Development, University of Health Sciences, Vientiane, Lao People's Democratic Republic.

Chea Nguon (C)

National Centre for Parasitology, Entomology & Malaria Control, Ministry of Health, Phnom Penh, Cambodia.

Lorenz von Seidlein (L)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

Mehul Dhorda (M)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

Thomas J Peto (TJ)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.

Francois Nosten (F)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Centre for Tropical Medicine, Churchill Hospital, Oxford, UK.
Shoklo Malaria Research Unit, Mae Sot, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand.

Nicholas J White (NJ)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Centre for Tropical Medicine, Churchill Hospital, Oxford, UK.

Arjen M Dondorp (AM)

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Centre for Tropical Medicine, Churchill Hospital, Oxford, UK.

Mallika Imwong (M)

Department of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand. noi@tropmedres.ac.
Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand. noi@tropmedres.ac.

Articles similaires

Genome, Chloroplast Phylogeny Genetic Markers Base Composition High-Throughput Nucleotide Sequencing

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C

Classifications MeSH