Phylogenetic Analysis of Mycobacterium tuberculosis Strains in Wales by Use of Core Genome Multilocus Sequence Typing To Analyze Whole-Genome Sequencing Data.
Mycobacterium tuberculosis
outbreak
phylogenetics
tuberculosis
whole-genome sequencing
Journal
Journal of clinical microbiology
ISSN: 1098-660X
Titre abrégé: J Clin Microbiol
Pays: United States
ID NLM: 7505564
Informations de publication
Date de publication:
06 2019
06 2019
Historique:
received:
18
12
2018
accepted:
27
03
2019
pubmed:
5
4
2019
medline:
23
6
2020
entrez:
5
4
2019
Statut:
epublish
Résumé
An inability to standardize the bioinformatic data produced by whole-genome sequencing (WGS) has been a barrier to its widespread use in tuberculosis phylogenetics. The aim of this study was to carry out a phylogenetic analysis of tuberculosis in Wales, United Kingdom, using Ridom SeqSphere software for core genome multilocus sequence typing (cgMLST) analysis of whole-genome sequencing data. The phylogenetics of tuberculosis in Wales have not previously been studied. Sixty-six
Identifiants
pubmed: 30944195
pii: JCM.02025-18
doi: 10.1128/JCM.02025-18
pmc: PMC6535603
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
Copyright © 2019 American Society for Microbiology.
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