Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil.
Animal Migration
Animals
Astroviridae
/ genetics
Astroviridae Infections
/ veterinary
Bird Diseases
/ virology
Brazil
Caliciviridae
/ genetics
Caliciviridae Infections
/ veterinary
Charadriiformes
/ virology
Chickens
/ virology
Chlorocebus aethiops
Cloaca
/ virology
Genome, Viral
High-Throughput Nucleotide Sequencing
Metagenome
Phylogeny
Vero Cells
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
03 04 2019
03 04 2019
Historique:
received:
04
01
2019
accepted:
25
03
2019
entrez:
5
4
2019
pubmed:
5
4
2019
medline:
31
10
2020
Statut:
epublish
Résumé
Birds are the natural reservoir of viruses with zoonotic potential, as well as contributing to the evolution, emergence, and dissemination of novel viruses. In this study, we applied a high-throughput screening approach to identify the diversity of viruses in 118 samples of birds captured between October 2006 to October 2010 in the North and Northeast regions of Brazil. We found nearly complete genomes of novel species of astrovirus and calicivirus in cloacal swabs of ruddy turnstones (Arenaria interpres) collected in Coroa do Avião islet, Pernambuco State. These viruses are positive-sense single-stranded RNA with a genome of ~7 to 8 kb, and were designated as Ruddy turnstone astrovirus (RtAstV) and Ruddy turnstone calicivirus (RTCV), respectively. Phylogenetic analysis showed that RtAstV and RTCV grouped in a monophyletic clade with viruses identified from poultry samples (i.e., chicken, goose, and turkey), including viruses associated with acute nephritis in chickens. Attempts of viral propagation in monkey and chicken cell lines for both viruses were unsuccessful. Also, we found genomes related with viral families that infect invertebrates and plants, suggesting that they might be ingested in the birds' diet. In sum, these findings shed new light on the diversity of viruses in migratory birds with the notable characterization of a novel astrovirus and calicivirus.
Identifiants
pubmed: 30944402
doi: 10.1038/s41598-019-42110-3
pii: 10.1038/s41598-019-42110-3
pmc: PMC6447618
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
5556Subventions
Organisme : Medical Research Council
ID : MC_UU_12014/12
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12014/9
Pays : United Kingdom
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