A novel picornavirus in feces of a rainbow lorikeet (Trichoglossus moluccanus) shows a close relationship to members of the genus Avihepatovirus.
3' Untranslated Regions
/ genetics
5' Untranslated Regions
/ genetics
Amino Acid Sequence
Animals
Feces
/ virology
Genome, Viral
/ genetics
Metagenomics
Parrots
/ virology
Phylogeny
Picornaviridae
/ classification
Picornaviridae Infections
/ veterinary
RNA, Viral
/ genetics
Viral Proteins
/ genetics
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
Jul 2019
Jul 2019
Historique:
received:
01
02
2019
accepted:
11
03
2019
pubmed:
15
4
2019
medline:
19
6
2019
entrez:
15
4
2019
Statut:
ppublish
Résumé
A novel picornavirus, named "lorikeet picornavirus 1" (LoPV-1), was detected in a fecal sample from rainbow lorikeets using viral metagenomic analysis, and its complete genome sequence was determined and analyzed. The genome of LoPV-1 is 7862 nt long, including a 617-nt 5' UTR, a type IV IRES 5'UTR with an '8-like' motif, a 7032-nt polyprotein ORF, and a 213-nt 3' UTR. Phylogenetic analysis and pairwise asequence comparisons based on the amino acid sequences of P1, P2, and P3 indicated that LoPV-1 showed the closest relationship to two picornaviruses that were isolated recently from red-crowned cranes and clustered together with members of the genus Avihepatovirus.
Identifiants
pubmed: 30982088
doi: 10.1007/s00705-019-04246-5
pii: 10.1007/s00705-019-04246-5
doi:
Substances chimiques
3' Untranslated Regions
0
5' Untranslated Regions
0
RNA, Viral
0
Viral Proteins
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1911-1914Subventions
Organisme : National Key Research and Development Programs of China
ID : 2017YFC1200201
Organisme : Jiangsu Provincial Key Research and Development Projects
ID : BE2017693
Organisme : the National Natural Science Foundation
ID : 31872478