Yersinia hibernica sp. nov., isolated from pig-production environments.
Illumina
Ireland
MinION
Oxford Nanopore Technologies
Yersinia
Journal
International journal of systematic and evolutionary microbiology
ISSN: 1466-5034
Titre abrégé: Int J Syst Evol Microbiol
Pays: England
ID NLM: 100899600
Informations de publication
Date de publication:
Jul 2019
Jul 2019
Historique:
pubmed:
9
5
2019
medline:
10
7
2019
entrez:
9
5
2019
Statut:
ppublish
Résumé
A Gram-stain-negative, rod-shaped strain isolated from pig-production environments was identified as a new species within the genus Yersinia using multifaceted genomic and biochemical approaches. The genome of this strain was closed using a hybrid assembly approach combining both high accuracy short read sequencing data with long read sequencing technology. Phylogenetic analysis of the 16S rRNA gene showed ~98 % similarity to Yersinia kristensenii and ~98 % similarity to Yersinia enterocolitica. Average nucleotide identity (OrthoANI) values were calculated as 85.79 % to Y. kristensenii ATCC 33638
Identifiants
pubmed: 31066656
doi: 10.1099/ijsem.0.003422
doi:
Substances chimiques
DNA, Bacterial
0
RNA, Ribosomal, 16S
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM