Composite Analysis of the Virome and Bacteriome of HIV/HPV Co-Infected Women Reveals Proxies for Immunodeficiency.
Adult
Bacteria
/ classification
CD4 Lymphocyte Count
Cervix Uteri
/ microbiology
Cohort Studies
Coinfection
/ immunology
Female
HIV Infections
/ immunology
HIV-1
/ genetics
High-Throughput Nucleotide Sequencing
Humans
Microbiota
Papillomaviridae
/ genetics
Papillomavirus Infections
/ immunology
Viruses
/ classification
Young Adult
HIV
HPV
immunodeficiency
microbiome
virome
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
07 05 2019
07 05 2019
Historique:
received:
25
03
2019
revised:
26
04
2019
accepted:
02
05
2019
entrez:
10
5
2019
pubmed:
10
5
2019
medline:
25
7
2020
Statut:
epublish
Résumé
The human cervical microbiome is complex, and its role in health and disease has just begun to be elucidated. In this study, 57 cervical swab samples from 19 HIV/HPV co-infected women were analyzed for both virome and bacteriome composition. Virome analysis focused on circular DNA viruses through rolling circle amplification followed by next-generation sequencing (NGS). Data were assigned to virus families and genera, and HPV types were identified. NGS data of bacterial 16S from a subset of 24 samples were assigned to operational taxonomic units and classified according to vaginal microbiome community state types (CSTs). Four viral families were found:
Identifiants
pubmed: 31067713
pii: v11050422
doi: 10.3390/v11050422
pmc: PMC6563245
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
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