Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut.
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2019
2019
Historique:
received:
17
01
2019
accepted:
26
04
2019
entrez:
16
5
2019
pubmed:
16
5
2019
medline:
18
1
2020
Statut:
epublish
Résumé
In previous studies, a sorghum mini core collection was scored over several years for response to Colletotrichum sublineola, Peronosclerospora sorghi, and Sporisorium reilianum, the causal agents of the disease anthracnose, downy mildew, and head smut, respectively. The screening results were combined with over 290,000 Single nucleotide polymorphic (SNP) loci from an updated version of a publicly available genotype by sequencing (GBS) dataset available for the mini core collection. GAPIT (Genome Association and Prediction Integrated Tool) R package was used to identify chromosomal locations that differ in disease response. When the top scoring SNPs were mapped to the most recent version of the published sorghum genome, in each case, a nearby and most often the closest annotated gene has precedence for a role in host defense.
Identifiants
pubmed: 31086384
doi: 10.1371/journal.pone.0216671
pii: PONE-D-19-01663
pmc: PMC6516728
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0216671Déclaration de conflit d'intérêts
The authors have declared that no competing interests exist.
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