Gene Expression analysis associated with salt stress in a reciprocally crossed rice population.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
03 06 2019
Historique:
received: 17 12 2018
accepted: 21 05 2019
entrez: 5 6 2019
pubmed: 5 6 2019
medline: 21 10 2020
Statut: epublish

Résumé

The rice landrace Horkuch, endemic to the southern saline coast of Bangladesh, is known to have salt tolerance traits and can therefore contribute to a high yielding recipient for breeding purposes. In this study, we reciprocally crossed Horkuch with high yielding but salt sensitive IR29 to detect the complement of genes that were responsible for conferring salt tolerance versus sensitivity at the seedling developmental stage. We looked at tolerant and sensitive F

Identifiants

pubmed: 31160691
doi: 10.1038/s41598-019-44757-4
pii: 10.1038/s41598-019-44757-4
pmc: PMC6546764
doi:

Substances chimiques

RNA, Messenger 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

8249

Références

BMC Plant Biol. 2013 Feb 27;13:32
pubmed: 23445750
J Exp Bot. 2012 Feb;63(3):1095-106
pubmed: 22143917
Funct Plant Biol. 2011 Apr;38(4):282-292
pubmed: 32480884
Rice (N Y). 2012 Dec;5(1):11
pubmed: 27234237
Plant Physiol. 2001 Jan;125(1):406-22
pubmed: 11154348
Front Plant Sci. 2016 May 12;7:609
pubmed: 27242816
Physiol Plant. 2015 Sep;155(1):43-54
pubmed: 26082319
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
PLoS One. 2012;7(7):e39865
pubmed: 22808069
Plant Cell Physiol. 2015 Apr;56(4):779-89
pubmed: 25637374
Planta. 2011 Nov;234(5):1007-18
pubmed: 21698458
Plant Cell. 2013 Jun;25(6):2115-31
pubmed: 23800963
Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.7
pubmed: 21154709
Theor Appl Genet. 2004 Jan;108(2):253-60
pubmed: 14513218
Front Plant Sci. 2014 Sep 16;5:467
pubmed: 25278946
Plant Cell. 2001 Apr;13(4):889-905
pubmed: 11283343
Ann Bot. 2007 Jun;99(6):1161-73
pubmed: 17428832
J Plant Physiol. 2014 Sep 1;171(14):1276-88
pubmed: 25014263
Curr Opin Biotechnol. 2014 Apr;26:115-24
pubmed: 24679267
Mol Plant Microbe Interact. 2001 Apr;14(4):527-35
pubmed: 11310740
Mol Biotechnol. 2009 Jun;42(2):195-204
pubmed: 19214808
Plant J. 2011 Mar;65(6):882-96
pubmed: 21251105
Ann Bot. 2009 Feb;103(4):551-60
pubmed: 18662937
Plant Physiol. 2005 Oct;139(2):822-35
pubmed: 16183841
J Exp Bot. 2012 May;63(8):3289-96
pubmed: 22345644
Biochem J. 2009 Dec 10;424(3):439-48
pubmed: 19785574
PLoS One. 2011;6(7):e21800
pubmed: 21789182
Ann Bot. 2016 May;117(6):1083-97
pubmed: 27063367
Annu Rev Plant Biol. 2008;59:651-81
pubmed: 18444910
J Exp Bot. 2007;58(15-16):4333-46
pubmed: 18182435
Amino Acids. 2010 Oct;39(4):933-47
pubmed: 20186554
J Exp Bot. 2014 Jul;65(12):2963-79
pubmed: 24755280
Plant Mol Biol. 2013 May;82(1-2):1-22
pubmed: 23456247
Biochim Biophys Acta. 2002 Aug 19;1577(1):1-9
pubmed: 12151089
BMC Bioinformatics. 2006 Jun 15;7:302
pubmed: 16776819
Sci Rep. 2015 Oct 09;5:14922
pubmed: 26449881
PLoS One. 2015 Aug 28;10(8):e0136692
pubmed: 26317213
EMBO J. 2000 Jun 1;19(11):2515-24
pubmed: 10835350
Mol Ecol. 2011 Sep;20(17):3599-616
pubmed: 21801258
Gene. 2005 Jan 3;344:171-80
pubmed: 15656983
Nat Genet. 2005 Oct;37(10):1141-6
pubmed: 16155566
Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86
pubmed: 22110026
Sci Rep. 2017 Apr 11;7:46138
pubmed: 28397857
Plant Cell Environ. 2010 Aug 1;33(8):1324-38
pubmed: 20374537
J Exp Bot. 2013 Jan;64(2):445-58
pubmed: 23307915
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W64-70
pubmed: 20435677

Auteurs

Samsad Razzaque (S)

Plant Biotechnology Lab, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh.
Department of Integrative Biology, The University of Texas at Austin, Austin, Texas, 78712, USA.

Sabrina M Elias (SM)

Plant Biotechnology Lab, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh.
Department of Agronomy and Horticulture, University of Nebraska, Lincoln, Nebraska, 68583, USA.

Taslima Haque (T)

Plant Biotechnology Lab, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh.
Department of Integrative Biology, The University of Texas at Austin, Austin, Texas, 78712, USA.

Sudip Biswas (S)

Plant Biotechnology Lab, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh.

G M Nurnabi Azad Jewel (GMNA)

Plant Biotechnology Lab, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh.

Sazzadur Rahman (S)

Plant Physiology Division, Bangladesh Rice Research Institute, Gazipur, Bangladesh.

Xiaoyu Weng (X)

Department of Integrative Biology, The University of Texas at Austin, Austin, Texas, 78712, USA.

Abdelbagi M Ismail (AM)

International Rice Research Institute, Los Banos, Laguna, Philippines.

Harkamal Walia (H)

Department of Agronomy and Horticulture, University of Nebraska, Lincoln, Nebraska, 68583, USA.

Thomas E Juenger (TE)

Department of Integrative Biology, The University of Texas at Austin, Austin, Texas, 78712, USA.

Zeba I Seraj (ZI)

Plant Biotechnology Lab, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, 1000, Bangladesh. zebai@du.ac.bd.

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Classifications MeSH