Hierarchical drivers of soil microbial community structure variability in "Monte Perdido" Massif (Central Pyrenees).


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
19 06 2019
Historique:
received: 16 10 2018
accepted: 05 06 2019
entrez: 21 6 2019
pubmed: 21 6 2019
medline: 21 10 2020
Statut: epublish

Résumé

Microbial activity is highly dependent on climatic factors (moisture and temperature) and edaphic characteristics in temperate ecosystems. Moreover, soil microbial community composition in high mountain areas is less known when compared to plant communities. In this study we investigated the soil microbial community from a functional perspective using PLFA (phospholipid fatty acid) methods in the four aspects of four summits (2,242 - 3,012 m above sea level) in the Spanish Central Pyrenees. Soil organic carbon (C), microbial biomass and nutrient dynamics ([Formula: see text] + [Formula: see text], N mineralization and nitrification potential) were also determined. Microbial biomass C was highest in the lowermost summit and decreased by approximately 50, 14 and 12% with increasing altitude. In each summit soil [Formula: see text] and [Formula: see text] concentrations differed significantly among summits and aspects. Soil nitrification potential varied significantly between the factors summit and aspects, e.g., southerly vs. northerly, easterly vs. westerly aspects. Gram negative bacteria and Actinobacteria functional groups dominated the microbial community, with almost 40% of the total PLFA. Non-metric multidimensional scale (NMS) analysis showed that most of the PLFA functional groups were present in all summits and aspects, although with specific biomarkers. A high abundance of biomarkers 16:1ω9c and 16:0 2OH (gram negative bacteria) were obtained in the lowermost summit, while the biomarkers 16.1ω7cDMA (anaerobes) and 19:3ω6c (Eukaryote) were only found in the uppermost summit. Linear mixed model (lmm) analysis was used with summit as fixed effect and aspect as random effect. In general, our results demonstrate a fundamental role for environment, principally moisture, temperature and organic matter in explaining the pattern observed for soil PLFA biomarkers. Under a global change scenario, we need to shed light on the relationships between soil microbial functional groups and soil nutrient-related variables in order to identify the associated patterns of decomposition rates and soil processes driven by microbial communities in mountain areas. The results could thus be used in global predictive models on climate change impact on C or N cycles in these environments.

Identifiants

pubmed: 31217456
doi: 10.1038/s41598-019-45372-z
pii: 10.1038/s41598-019-45372-z
pmc: PMC6584728
doi:

Substances chimiques

Soil 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

8768

Références

Appl Environ Microbiol. 2004 May;70(5):2867-79
pubmed: 15128545
PLoS One. 2011 May 12;6(5):e19950
pubmed: 21589876
Oecologia. 2011 Nov;167(3):781-91
pubmed: 21625979
ISME J. 2017 Sep;11(9):2102-2111
pubmed: 28534876
Chemosphere. 1997 Jul;35(1-2):275-94
pubmed: 9232001
Front Microbiol. 2017 Jun 13;8:976
pubmed: 28659870
Science. 2010 Oct 8;330(6001):192-6
pubmed: 20929768
Ecology. 2018 Nov;99(11):2455-2466
pubmed: 30076592
Nature. 1994 Jun 9;369(6480):448
pubmed: 23320303
Front Microbiol. 2013 Mar 27;4:64
pubmed: 23543612
Oecologia. 1996 Jan;105(1):1-12
pubmed: 28307116
Science. 2012 Apr 20;336(6079):353-5
pubmed: 22517860
Microb Ecol. 2016 Jul;72(1):207-220
pubmed: 26961712
Ecology. 2006 Jul;87(7):1659-70
pubmed: 16922317
Oecologia. 1981 Aug;50(1):113-116
pubmed: 28310071
FEMS Microbiol Ecol. 2009 Feb;67(2):208-18
pubmed: 19049494
Science. 2004 Jun 11;304(5677):1629-33
pubmed: 15192218
Ecology. 2006 Mar;87(3):570-9
pubmed: 16602287
Ecol Evol. 2015 Oct 26;5(22):5295-5304
pubmed: 30151132
Sci Total Environ. 2014 Mar 1;473-474:465-72
pubmed: 24388900
Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6571-4
pubmed: 16614072
Microb Ecol. 2000 Aug;40(3):223-237
pubmed: 11080380
PLoS One. 2013 Jun 11;8(6):e66184
pubmed: 23776630
Nature. 2011 Oct 05;478(7367):49-56
pubmed: 21979045
New Phytol. 2015 Feb;205(3):1175-82
pubmed: 25348596
FEMS Microbiol Ecol. 2014 Jan;87(1):121-32
pubmed: 23991911

Auteurs

Juan J Jiménez (JJ)

Department of Biodiversity and Ecosystem Restoration, Pyrenean Institute of Ecology (IPE), Spanish National Research Council (CSIC), Jaca (Huesca), Spain. jjimenez@ipe.csic.es.

José M Igual (JM)

Instituto de Recursos Naturales y Agrobiología de Salamanca (IRNASA-CSIC), Salamanca, Spain.

Luis Villar (L)

Department of Biodiversity and Ecosystem Restoration, Pyrenean Institute of Ecology (IPE), Spanish National Research Council (CSIC), Jaca (Huesca), Spain.

José L Benito-Alonso (JL)

Jolube consulting (www.jolube.es), Mariano Rodríguez de Ledesma, 4, 22700, Jaca, Spain.

Jesús Abadias-Ullod (J)

Department of Biodiversity and Ecosystem Restoration, Pyrenean Institute of Ecology (IPE), Spanish National Research Council (CSIC), Jaca (Huesca), Spain.

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