Mutations in a conserved loop in the PSST subunit of respiratory complex I affect ubiquinone binding and dynamics.


Journal

Biochimica et biophysica acta. Bioenergetics
ISSN: 1879-2650
Titre abrégé: Biochim Biophys Acta Bioenerg
Pays: Netherlands
ID NLM: 101731706

Informations de publication

Date de publication:
01 07 2019
Historique:
received: 13 12 2018
revised: 10 05 2019
accepted: 15 06 2019
pubmed: 22 6 2019
medline: 9 11 2019
entrez: 22 6 2019
Statut: ppublish

Résumé

Respiratory complex I catalyses the reduction of ubiquinone (Q) from NADH coupled to proton pumping across the inner membrane of mitochondria. The electrical charging of the inner mitochondrial membrane drives the synthesis of ATP, which is used to power biochemical reactions of the cell. The recent surge in structural data on complex I from bacteria and mitochondria have contributed to significant understanding of its molecular architecture. However, despite these accomplishments, the role of various subdomains in redox-coupled proton pumping remains entirely unclear. In this work, we have mutated conserved residues in the loop of the PSST subunit that faces the ~30 Å long unique Q-binding tunnel of respiratory complex I. The data show a drastic decrease in Q reductase activity upon mutating several residues despite full assembly of the complex. In-silico modeling and multiple microsecond long molecular dynamics simulations of wild-type and enzyme variants with exchanges of conserved arginine residues revealed remarkable ejection of the bound Q from the site near terminal electron donor N2. Based on experiments and long-time scale molecular simulations, we identify microscopic elements that dynamically control the diffusion of Q and are central to redox-coupled proton pumping in respiratory complex I.

Identifiants

pubmed: 31226318
pii: S0005-2728(19)30058-1
doi: 10.1016/j.bbabio.2019.06.006
pii:
doi:

Substances chimiques

Fungal Proteins 0
Protein Subunits 0
Ubiquinone 1339-63-5
Electron Transport Complex I EC 7.1.1.2

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

573-581

Informations de copyright

Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.

Auteurs

Etienne Galemou Yoga (E)

Structural Bioenergetics Group, Institute of Biochemistry II, Medical School, Goethe-University, Frankfurt am Main, Germany; Centre for Biomolecular Magnetic Resonance, Institute for Biophysical Chemistry, University of Frankfurt, Frankfurt am Main, Germany.

Outi Haapanen (O)

Department of Physics, University of Helsinki, Helsinki, Finland.

Ilka Wittig (I)

Functional Proteomics, ZBC, Medical School, Goethe University, Frankfurt am Main, Germany; Cluster of Excellence Frankfurt "Macromolecular Complexes", Goethe-University, Frankfurt am Main, Germany.

Karin Siegmund (K)

Structural Bioenergetics Group, Institute of Biochemistry II, Medical School, Goethe-University, Frankfurt am Main, Germany; Centre for Biomolecular Magnetic Resonance, Institute for Biophysical Chemistry, University of Frankfurt, Frankfurt am Main, Germany.

Vivek Sharma (V)

Department of Physics, University of Helsinki, Helsinki, Finland; Institute of Biotechnology, University of Helsinki, Helsinki, Finland. Electronic address: vivek.sharma@helsinki.fi.

Volker Zickermann (V)

Structural Bioenergetics Group, Institute of Biochemistry II, Medical School, Goethe-University, Frankfurt am Main, Germany; Centre for Biomolecular Magnetic Resonance, Institute for Biophysical Chemistry, University of Frankfurt, Frankfurt am Main, Germany; Cluster of Excellence Frankfurt "Macromolecular Complexes", Goethe-University, Frankfurt am Main, Germany. Electronic address: Zickermann@med.uni-frankfurt.de.

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Classifications MeSH