Regulation of Bacterial Gene Expression by Transcription Attenuation.
RNA-binding proteins
Rho-dependent termination
bacterial gene regulation
intrinsic termination
reiterative transcription
riboswitches
transcription attenuation
Journal
Microbiology and molecular biology reviews : MMBR
ISSN: 1098-5557
Titre abrégé: Microbiol Mol Biol Rev
Pays: United States
ID NLM: 9706653
Informations de publication
Date de publication:
21 08 2019
21 08 2019
Historique:
entrez:
5
7
2019
pubmed:
5
7
2019
medline:
1
7
2020
Statut:
epublish
Résumé
A wide variety of mechanisms that control gene expression in bacteria are based on conditional transcription termination. Generally, in these mechanisms, a transcription terminator is located between a promoter and a downstream gene(s), and the efficiency of the terminator is controlled by a regulatory effector that can be a metabolite, protein, or RNA. The most common type of regulation involving conditional termination is transcription attenuation, in which the primary regulatory target is an essential element of a single terminator. The terminator can be either intrinsic or Rho dependent, with each presenting unique regulatory targets. Transcription attenuation mechanisms can be divided into five classes based primarily on the manner in which transcription termination is rendered conditional. This review summarizes each class of control mechanisms from a historical perspective, describes important examples in a physiological context and the current state of knowledge, highlights major advances, and discusses expectations of future discoveries.
Identifiants
pubmed: 31270135
pii: 83/3/e00019-19
doi: 10.1128/MMBR.00019-19
pmc: PMC6710462
pii:
doi:
Substances chimiques
RNA, Bacterial
0
RNA-Binding Proteins
0
Riboswitch
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Review
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIGMS NIH HHS
ID : R01 GM029466
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM094466
Pays : United States
Informations de copyright
Copyright © 2019 American Society for Microbiology.
Références
Trends Genet. 1999 Nov;15(11):439-42
pubmed: 10529804
Proc Natl Acad Sci U S A. 1975 Sep;72(9):3453-7
pubmed: 1103149
EMBO Rep. 2000 Jul;1(1):18-23
pubmed: 11256617
Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9736-41
pubmed: 11470904
Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):8997-9001
pubmed: 11470925
Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9465-7
pubmed: 11504932
Science. 2001 Sep 14;293(5537):2057-9
pubmed: 11557884
Nucleic Acids Res. 2001 Dec 1;29(23):4851-65
pubmed: 11726695
Proc Natl Acad Sci U S A. 1979 Nov;76(11):5524-8
pubmed: 118451
Arch Microbiol. 2002 Jun;177(6):433-40
pubmed: 12029388
Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11067-72
pubmed: 12161562
Bioessays. 2002 Aug;24(8):700-7
pubmed: 12210530
Biochim Biophys Acta. 2002 Sep 13;1577(2):240-50
pubmed: 12213655
Science. 2002 Sep 13;297(5588):1864-7
pubmed: 12228716
Nature. 2002 Oct 31;419(6910):952-6
pubmed: 12410317
Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):15908-13
pubmed: 12456892
Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7099-104
pubmed: 12771379
Chembiochem. 2003 Oct 6;4(10):1024-32
pubmed: 14523920
Nat Struct Mol Biol. 2004 Jan;11(1):29-35
pubmed: 14718920
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6421-6
pubmed: 15096624
Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10943-8
pubmed: 15252202
J Bacteriol. 2005 Mar;187(5):1773-82
pubmed: 15716449
Curr Opin Microbiol. 2005 Apr;8(2):127-34
pubmed: 15802242
Cell. 2006 Apr 7;125(1):71-84
pubmed: 16615891
Cell. 1990 Sep 21;62(6):1153-63
pubmed: 1698125
J Bacteriol. 2007 Mar;189(5):2176-80
pubmed: 17158658
Mol Microbiol. 2007 Mar;63(5):1440-52
pubmed: 17302819
Microbiology. 2007 Mar;153(Pt 3):693-700
pubmed: 17322189
J Bacteriol. 1992 Feb;174(4):1299-306
pubmed: 1735721
Nature. 2007 Jul 12;448(7150):157-62
pubmed: 17581590
Nucleic Acids Res. 2007;35(14):4809-19
pubmed: 17621584
RNA. 2007 Nov;13(11):2020-33
pubmed: 17881743
Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16092-7
pubmed: 17911257
FEBS J. 2008 Feb;275(4):655-70
pubmed: 18190533
J Bacteriol. 2008 Jul;190(14):4791-7
pubmed: 18424524
Microbiol Mol Biol Rev. 2008 Jun;72(2):266-300, table of contents
pubmed: 18535147
J Bacteriol. 1991 Sep;173(17):5589-91
pubmed: 1885537
Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):50-4
pubmed: 19104062
Microbiol Mol Biol Rev. 2009 Mar;73(1):36-61
pubmed: 19258532
Annu Rev Microbiol. 2009;63:27-44
pubmed: 19385727
Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13523-8
pubmed: 19633194
Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15406-11
pubmed: 19706412
J Bacteriol. 2010 Jan;192(2):604-7
pubmed: 19897653
Genome Biol. 2010;11(3):R31
pubmed: 20230605
Cell. 2010 Sep 3;142(5):737-48
pubmed: 20813261
Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):792-7
pubmed: 21183718
Proc Natl Acad Sci U S A. 1990 Nov;87(22):8726-30
pubmed: 2123343
Curr Opin Microbiol. 2011 Apr;14(2):142-7
pubmed: 21334966
Curr Opin Microbiol. 2011 Apr;14(2):160-6
pubmed: 21342782
Nat Rev Microbiol. 2011 May;9(5):319-29
pubmed: 21478900
Nucleic Acids Res. 2011 Oct;39(19):8586-98
pubmed: 21745821
Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5376-81
pubmed: 22431636
Nucleic Acids Res. 2012 Aug;40(15):7442-51
pubmed: 22570421
Genes Dev. 2012 Aug 15;26(16):1864-73
pubmed: 22895254
Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15906-11
pubmed: 22984181
Genes Dev. 2012 Dec 1;26(23):2621-33
pubmed: 23207917
Science. 2013 Jan 4;339(6115):85-8
pubmed: 23239624
Cell. 2013 Jan 17;152(1-2):17-24
pubmed: 23332744
Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7240-5
pubmed: 23589841
Nature. 2013 Aug 15;500(7462):363-6
pubmed: 23892783
Nucleic Acids Res. 2014 Jan;42(2):1245-56
pubmed: 24137004
Biochemistry. 2013 Nov 12;52(45):8036-47
pubmed: 24138583
J Bacteriol. 1986 Apr;166(1):217-23
pubmed: 2420781
J Bacteriol. 1986 May;166(2):461-71
pubmed: 2422155
PLoS One. 2014 Feb 04;9(2):e88097
pubmed: 24505391
Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3140-5
pubmed: 24516160
Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3442-7
pubmed: 24550461
Proc Natl Acad Sci U S A. 1988 Oct;85(19):7149-53
pubmed: 2459698
Proc Natl Acad Sci U S A. 2014 May 13;111(19):E1999-2007
pubmed: 24778260
Biochim Biophys Acta. 2014 Oct;1839(10):959-963
pubmed: 24816551
Genes Dev. 2014 Jun 1;28(11):1239-51
pubmed: 24888591
Mol Cell. 2014 Jul 3;55(1):148-55
pubmed: 24954903
Chem Biol. 2014 Jul 17;21(7):880-889
pubmed: 25036777
Nucleic Acids Res. 2015 Feb 27;43(4):2367-77
pubmed: 25662222
Braz J Microbiol. 2015 Mar 04;45(4):1139-44
pubmed: 25763016
J Mol Biol. 2015 Dec 4;427(24):3834-49
pubmed: 26523680
J Bacteriol. 1989 Jun;171(6):3337-42
pubmed: 2656651
Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):E6835-43
pubmed: 26630006
Cell. 1989 Sep 8;58(5):847-55
pubmed: 2673534
Life (Basel). 2016 Jan 12;6(1):null
pubmed: 26771646
Microbiology. 2016 Mar;162(3):433-47
pubmed: 26796109
Annu Rev Biochem. 2016 Jun 2;85:319-47
pubmed: 27023849
J Mol Biol. 2016 May 22;428(10 Pt B):2217-27
pubmed: 27108680
Trends Biochem Sci. 2016 Aug;41(8):690-699
pubmed: 27325240
Annu Rev Microbiol. 2016 Sep 8;70:361-74
pubmed: 27607554
Cell. 2016 Sep 22;167(1):111-121.e13
pubmed: 27662085
Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15096-15101
pubmed: 27849575
Microbiol Mol Biol Rev. 2016 Dec 28;81(1):
pubmed: 28031352
J Bacteriol. 2017 Feb 28;199(6):
pubmed: 28069823
G3 (Bethesda). 2017 Mar 10;7(3):983-989
pubmed: 28122954
Nucleic Acids Res. 2017 Jan 25;45(2):631-642
pubmed: 28123036
RNA. 2017 Jul;23(7):995-1011
pubmed: 28396576
EMBO J. 1988 Oct;7(10):3271-7
pubmed: 2846278
J Bacteriol. 2017 Jun 27;199(14):
pubmed: 28507243
Nucleic Acids Res. 2017 Jul 7;45(12):7474-7486
pubmed: 28520932
Sci Signal. 2017 Jun 13;10(483):null
pubmed: 28611182
Mol Cell. 2017 Jul 6;67(1):30-43.e6
pubmed: 28648779
PLoS Genet. 2017 Jul 19;13(7):e1006909
pubmed: 28723971
Microbiol Spectr. 2018 Mar;6(2):
pubmed: 29573256
Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):3894-3899
pubmed: 29581302
Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6052-6057
pubmed: 29784782
Cold Spring Harb Perspect Biol. 2018 Nov 1;10(11):
pubmed: 29844057
Nucleic Acids Res. 2018 Sep 19;46(16):8245-8260
pubmed: 29931073
Microbiol Spectr. 2018 Jul;6(4):
pubmed: 30051797
Microbiol Spectr. 2018 Sep;6(5):
pubmed: 30191803
J Mol Biol. 1986 Sep 5;191(1):85-95
pubmed: 3025456
RNA. 2019 Jan;25(1):23-34
pubmed: 30287481
J Biol Chem. 1988 Oct 5;263(28):14251-5
pubmed: 3049573
J Bacteriol. 1988 Jul;170(7):3080-8
pubmed: 3133360
J Biol Chem. 1988 Jan 15;263(2):609-12
pubmed: 3275656
Cell. 1987 Jul 31;50(3):485-94
pubmed: 3301003
Proc Natl Acad Sci U S A. 1977 Oct;74(10):4365-9
pubmed: 337297
Annu Rev Biochem. 1978;47:967-96
pubmed: 354508
Proc Natl Acad Sci U S A. 1978 Sep;75(9):4281-5
pubmed: 360216
Proc Natl Acad Sci U S A. 1978 Dec;75(12):5988-92
pubmed: 366606
Nature. 1974 Jun 7;249(457):523-7
pubmed: 4599761
Nature. 1969 Dec 6;224(5223):957-64
pubmed: 5360547
EMBO J. 1984 Dec 1;3(12):2857-61
pubmed: 6098450
Nucleic Acids Res. 1980 May 24;8(10):2295-9
pubmed: 6159577
J Bacteriol. 1984 Jun;158(3):1018-24
pubmed: 6233264
Proc Natl Acad Sci U S A. 1983 Jan;80(2):368-72
pubmed: 6300835
Proc Natl Acad Sci U S A. 1980 Jan;77(1):508-12
pubmed: 6987654
Nature. 1981 Feb 26;289(5800):751-8
pubmed: 7007895
J Biol Chem. 1994 Jul 8;269(27):18185-91
pubmed: 7517939
Mol Microbiol. 1994 Aug;13(3):381-7
pubmed: 7527891
Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7916-20
pubmed: 7544009
J Cell Biochem. 1993 Jan;51(1):83-90
pubmed: 7679391
Nature. 1995 Apr 20;374(6524):693-700
pubmed: 7715723
J Bacteriol. 1995 Jan;177(1):271-4
pubmed: 7798145
J Bacteriol. 1995 Mar;177(5):1315-25
pubmed: 7868607
J Bacteriol. 1994 Jun;176(12):3708-22
pubmed: 8206849
Cell. 1993 Aug 13;74(3):475-82
pubmed: 8348614
Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14462-7
pubmed: 8962074
J Mol Biol. 1997 Aug 1;270(5):696-710
pubmed: 9245598
Annu Rev Genet. 1979;13:319-53
pubmed: 94251
J Biol Chem. 1998 Mar 6;273(10):5932-8
pubmed: 9488732