Evolutionary history of teleost intron-containing and intron-less rhodopsin genes.

Animals Biological Evolution Evolution, Molecular Fishes / genetics Introns Phylogeny Pineal Gland / metabolism Retina / metabolism Rhodopsin / genetics

Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
23 07 2019
Historique:
received: 15 02 2019
accepted: 09 07 2019
entrez: 25 7 2019
pubmed: 25 7 2019
medline: 24 10 2020
Statut: epublish

Résumé

Recent progress in whole genome sequencing has revealed that animals have various kinds of opsin genes for photoreception. Among them, most opsin genes have introns in their coding regions. However, it has been known for a long time that teleost retinas express intron-less rhodopsin genes, which are presumed to have been formed by retroduplication from an ancestral intron-containing rhodopsin gene. In addition, teleosts have an intron-containing rhodopsin gene (exo-rhodopsin) exclusively for pineal photoreception. In this study, to unravel the evolutionary origin of the two teleost rhodopsin genes, we analyzed the rhodopsin genes of non-teleost fishes in the Actinopterygii. The phylogenetic analysis of full-length sequences of bichir, sturgeon and gar rhodopsins revealed that retroduplication of the rhodopsin gene occurred after branching of the bichir lineage. In addition, analysis of the tissue distribution and the molecular properties of bichir, sturgeon and gar rhodopsins showed that the abundant and exclusive expression of intron-containing rhodopsin in the pineal gland and the short lifetime of its meta II intermediate, which leads to optimization for pineal photoreception, were achieved after branching of the gar lineage. Based on these results, we propose a stepwise evolutionary model of teleost intron-containing and intron-less rhodopsin genes.

Identifiants

DOI: 10.1038/s41598-019-47028-4 PMID: 31337799 PMC: PMC6650399
pubmed: 31337799
doi: 10.1038/s41598-019-47028-4
pii: 10.1038/s41598-019-47028-4
pmc: PMC6650399
doi:

Substances chimiques

Rhodopsin 9009-81-8

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

10653

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Auteurs

Chihiro Fujiyabu (C)

Faculty of Science, Kyoto University, Kyoto, 606-8502, Japan.

Keita Sato (K)

Department of Cytology and Histology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, 700-8558, Japan.
ORCID: 0000-0002-7089-2951

Ni Made Laksmi Utari (NML)

Department of Cytology and Histology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, 700-8558, Japan.
Department of Ophthalmology, Faculty of Medicine, Udayana University, Bali, Indonesia.

Hideyo Ohuchi (H)

Department of Cytology and Histology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, 700-8558, Japan.

Yoshinori Shichida (Y)

Faculty of Science, Kyoto University, Kyoto, 606-8502, Japan.
Research Organization for Science and Technology, Ritsumeikan University, Shiga, 525-8577, Japan.
Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan.

Takahiro Yamashita (T)

Faculty of Science, Kyoto University, Kyoto, 606-8502, Japan. yamashita.takahiro.4z@kyoto-u.ac.jp.
Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan. yamashita.takahiro.4z@kyoto-u.ac.jp.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Evolutionary history of teleost...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Evolutionary history of teleost...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › Evolutionary history of teleost...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Poissons › Evolutionary history of teleost...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Gènes › Composants de gène › Introns › Evolutionary history of teleost...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Evolutionary history of teleost...
questionsmedicales.fr › Système nerveux › Système neuroendocrinien › Glande pinéale › Evolutionary history of teleost...
questionsmedicales.fr › Organes des sens › Oeil › Rétine › Evolutionary history of teleost...
questionsmedicales.fr › Facteurs biologiques › Pigments biologiques › Pigments rétiniens › Opsines › Opsines des bâtonnets › Rhodopsine › Evolutionary history of teleost...