Historical phenotypic data from seven decades of seed regeneration in a wheat ex situ collection.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
29 07 2019
Historique:
received: 20 03 2019
accepted: 08 07 2019
entrez: 31 7 2019
pubmed: 31 7 2019
medline: 18 8 2020
Statut: epublish

Résumé

Genebanks are valuable sources of genetic diversity, which can help to cope with future problems of global food security caused by a continuously growing population, stagnating yields and climate change. However, the scarcity of phenotypic and genotypic characterization of genebank accessions severely restricts their use in plant breeding. To warrant the seed integrity of individual accessions during periodical regeneration cycles in the field phenotypic characterizations are performed. This study provides non-orthogonal historical data of 12,754 spring and winter wheat accessions characterized for flowering time, plant height, and thousand grain weight during 70 years of seed regeneration at the German genebank. Supported by historical weather observations outliers were removed following a previously described quality assessment pipeline. In this way, ready-to-use processed phenotypic data across regeneration years were generated and further validated. We encourage international and national genebanks to increase their efforts to transform into bio-digital resource centers. A first important step could consist in unlocking their historical data treasures that allows an educated choice of accessions by scientists and breeders.

Identifiants

pubmed: 31358775
doi: 10.1038/s41597-019-0146-y
pii: 10.1038/s41597-019-0146-y
pmc: PMC6662709
doi:

Types de publication

Dataset Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

137

Références

Brief Funct Genomics. 2012 Jan;11(1):38-50
pubmed: 22257472
Nat Genet. 2012 Jan 27;44(2):121-6
pubmed: 22281772
Plant Dis. 2007 Nov;91(11):1445-1449
pubmed: 30780749
Sci Data. 2016 Mar 15;3:160018
pubmed: 26978244
Theor Appl Genet. 2018 Sep;131(9):2009-2019
pubmed: 29959470
Sci Data. 2018 Dec 04;5:180278
pubmed: 30512010
Science. 2010 Feb 12;327(5967):812-8
pubmed: 20110467
Proc Biol Sci. 2010 Aug 22;277(1693):2451-7
pubmed: 20375052
Database (Oxford). 2015 May 07;2015:bav021
pubmed: 25953079
PLoS One. 2013 Jun 19;8(6):e66428
pubmed: 23840465
Ann Bot. 2018 Mar 14;121(4):603-616
pubmed: 29240874
Sci Rep. 2018 Nov 15;8(1):16865
pubmed: 30442973
Science. 2002 May 31;296(5573):1689-91
pubmed: 12040195
Front Plant Sci. 2016 Jul 06;7:991
pubmed: 27458472
Database (Oxford). 2016 Apr 17;2016:
pubmed: 27087305
Sci Rep. 2014 Jun 10;4:5231
pubmed: 24912875
Nature. 2013 Jul 4;499(7456):23-4
pubmed: 23823779
Front Plant Sci. 2018 May 08;9:609
pubmed: 29868066
Sci Data. 2019 Jul 29;6(1):137
pubmed: 31358775
Biotechnol J. 2006 Dec;1(12):1393-404
pubmed: 17124716

Auteurs

Norman Philipp (N)

Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

Stephan Weise (S)

Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

Markus Oppermann (M)

Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

Andreas Börner (A)

Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

Jens Keilwagen (J)

Institute for Biosafety in Plant Biotechnology, Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, 06484, Quedlinburg, Germany.

Benjamin Kilian (B)

Global Crop Diversity Trust, Platz der Vereinten Nationen 7, 53113, Bonn, Germany.

Daniel Arend (D)

Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

Yusheng Zhao (Y)

Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

Andreas Graner (A)

Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

Jochen C Reif (JC)

Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany. reif@ipk-gatersleben.de.

Albert W Schulthess (AW)

Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Seeland/OT, Gatersleben, Germany.

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Classifications MeSH