Evaluation of loop-mediated isothermal amplification (LAMP) assay for detection of aprV2 positive Dichelobacter nodosus in-field by secondary users.
Animal Technicians
/ standards
Animals
Bacterial Proteins
/ genetics
Dichelobacter nodosus
/ genetics
Foot Rot
/ diagnosis
Gram-Negative Bacterial Infections
/ diagnosis
Nucleic Acid Amplification Techniques
/ methods
Reproducibility of Results
Sensitivity and Specificity
Serine Endopeptidases
/ genetics
Sheep
Sheep Diseases
/ diagnosis
South Australia
D. nodosus
Field
Footrot
LAMP
Secondary users
Journal
BMC research notes
ISSN: 1756-0500
Titre abrégé: BMC Res Notes
Pays: England
ID NLM: 101462768
Informations de publication
Date de publication:
22 Aug 2019
22 Aug 2019
Historique:
received:
18
06
2019
accepted:
17
08
2019
entrez:
24
8
2019
pubmed:
24
8
2019
medline:
6
2
2020
Statut:
epublish
Résumé
Dichelobacter nodosus is the primary aetiological agent of footrot in sheep. Ovine footrot causes considerable economic losses and substantial animal welfare issues in the Australian sheep industry. Current methods for detecting D. nodosus are difficult, laborious and time-consuming. Recently, we developed a robust LAMP assay (VDN LAMP) that was able to identify aprV2 positive D. nodosus in-field. A major advantage of LAMP technology is the ability of the assay to be performed by non-specialists with minimal training. We aimed to assess the performance of the VDN LAMP in-field in comparison to a laboratory-based aprV2/aprB2 rtPCR when used by secondary users after training by the authors. Two animal health officers (termed secondary users) from Department of Primary Industries and Regions, South Australia (PIRSA) were trained in the use of VDN LAMP, before carrying out in-field testing on several locations in South Australia. The performance of VDN LAMP assay by secondary user 1 was shown to successfully detect 73.91% (n = 53) aprV2 positive samples, while secondary user 2 detected 37.93% (n = 30) aprV2 positive samples. Overall, the ability to identify virulent D. nodosus by VDN LAMP by secondary users was mixed for various reasons, however, this could be rectified by additional training and commercial production of the LAMP kits to increase stability. We envisaged in the future VDN LAMP will able to be used by non-specialists to aid control programs.
Identifiants
pubmed: 31439030
doi: 10.1186/s13104-019-4575-7
pii: 10.1186/s13104-019-4575-7
pmc: PMC6704695
doi:
Substances chimiques
Bacterial Proteins
0
Serine Endopeptidases
EC 3.4.21.-
V2 protease, Dichelobacter nodosus
EC 3.4.21.-
Types de publication
Evaluation Study
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
534Références
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