Characterization of internal ribosome entry sites according to secondary structure analysis to classify border disease virus strains.

5' Untranslated Regions / genetics Animals Border disease virus / classification Genome, Viral Internal Ribosome Entry Sites Inverted Repeat Sequences Nucleic Acid Conformation Phylogeny RNA, Viral / chemistry
Border disease virus Internal ribosome entry site Secondary structure

Journal

Journal of virological methods
ISSN: 1879-0984
Titre abrégé: J Virol Methods
Pays: Netherlands
ID NLM: 8005839

Informations de publication

Date de publication:
01 2020
Historique:
received: 05 12 2018
revised: 18 06 2019
accepted: 18 07 2019
pubmed: 14 9 2019
medline: 20 3 2021
entrez: 14 9 2019
Statut: ppublish

Résumé

Applying palindromic nucleotide substitutions (PNS) method, variable loci of the internal ribosome entry site (IRES) secondary structure in the 5' untranslated region (UTR) of Border disease virus sequences were analysed allowing their allocation into ten IRES classes within the species. Sequence characteristics of Turkish and Chinese strains were highly divergent from other genogroups, indicating geographic segregation and micro-evolutive steps within the species. Observed heterogeneity in the BDV species has to be considered for potential implications on diagnostic tests, control and preventive measures.

Identifiants

DOI: 10.1016/j.jviromet.2019.113704 PMID: 31518634
pubmed: 31518634
pii: S0166-0934(18)30594-9
doi: 10.1016/j.jviromet.2019.113704
pii:
doi:

Substances chimiques

5' Untranslated Regions 0
Internal Ribosome Entry Sites 0
RNA, Viral 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

113704

Informations de copyright

Crown Copyright © 2019. Published by Elsevier B.V. All rights reserved.

Auteurs

Massimo Giangaspero (M)

Faculty of Veterinary Medicine, University of Teramo, Italy. Electronic address: giangasp@gmail.com.

Falko Steinbach (F)

Mammalian Virology Group, Virology Department, Animal and Plant Health Agency (APHA), United Kingdom.

Rebecca Strong (R)

Mammalian Virology Group, Virology Department, Animal and Plant Health Agency (APHA), United Kingdom.

Nicola Decaro (N)

Faculty of Veterinary Medicine, University of Bari, Italy.

Canio Buonavoglia (C)

Faculty of Veterinary Medicine, University of Bari, Italy.

Lorenzo Domenis (L)

Centro di Referenza Nazionale per le Malattie degli Animali, Selvatici (CeRMAS), Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta, Quart, Italy.

Pietro Gargano (P)

Istituto Zooprofilattico Sperimentale del Mezzogiorno, Catanzaro, Italy.

Xavier Bailly (X)

Institut National de la Recherche Agronomique, France.

Claudio Apicella (C)

Directorate General of Veterinary Public Health, Food and Nutrition, Ministry of Health, Rome, Italy.

Pasquale Turno (P)

Directorate General of Veterinary Public Health, Food and Nutrition, Ministry of Health, Rome, Italy.

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Gènes › Composants de gène › Régions non traduites › Régions 5' non traduites › Characterization of internal ribosome entry...
questionsmedicales.fr › Eucaryotes › Animaux › Characterization of internal ribosome entry...
questionsmedicales.fr › Virus › Virus à ARN › Virus à ARN à brin positif › Flaviviridae › Pestivirus › Virus de la maladie de Border › Characterization of internal ribosome entry...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome viral › Characterization of internal ribosome entry...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Séquences d'acides nucléiques régulatrices › Séquences régulatrices de l'acide ribonucléique › Sites internes d'entrée des ribosomes › Characterization of internal ribosome entry...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Séquences répétées d'acides nucléiques › Séquences répétées inversées › Characterization of internal ribosome entry...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Conformation d'acide nucléique › Characterization of internal ribosome entry...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Characterization of internal ribosome entry...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN viral › Characterization of internal ribosome entry...