Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes.
Archaeology
/ methods
DNA, Bacterial
/ chemistry
Europe, Eastern
/ epidemiology
Fossils
Genome, Bacterial
/ genetics
High-Throughput Nucleotide Sequencing
/ methods
Humans
Pandemics
Phylogeny
Phylogeography
Plague
/ epidemiology
Polymorphism, Single Nucleotide
Time Factors
Virulence
/ genetics
Yersinia pestis
/ genetics
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
02 10 2019
02 10 2019
Historique:
received:
18
12
2018
accepted:
15
08
2019
entrez:
4
10
2019
pubmed:
4
10
2019
medline:
14
1
2020
Statut:
epublish
Résumé
The second plague pandemic, caused by Yersinia pestis, devastated Europe and the nearby regions between the 14
Identifiants
pubmed: 31578321
doi: 10.1038/s41467-019-12154-0
pii: 10.1038/s41467-019-12154-0
pmc: PMC6775055
doi:
Substances chimiques
DNA, Bacterial
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
4470Subventions
Organisme : Wellcome Trust
ID : 200368/Z/15/Z
Pays : United Kingdom
Références
Nucleic Acids Res. 2010 Apr;38(6):e87
pubmed: 20028723
PLoS Genet. 2008 Jul 18;4(7):e1000128
pubmed: 18650965
Genome Announc. 2015 Dec 03;3(6):
pubmed: 26634751
Cold Spring Harb Protoc. 2010 Jun;2010(6):pdb.prot5448
pubmed: 20516186
Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):577-82
pubmed: 23271803
Genome Res. 2009 Sep;19(9):1639-45
pubmed: 19541911
PLoS One. 2017 Oct 26;12(10):e0187230
pubmed: 29073248
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Mol Microbiol. 1994 Aug;13(4):697-708
pubmed: 7997181
Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15758-63
pubmed: 24019490
PLoS One. 2016 Jan 13;11(1):e0145194
pubmed: 26760973
Curr Biol. 2017 Dec 4;27(23):3683-3691.e8
pubmed: 29174893
J Bacteriol. 1989 Sep;171(9):4761-6
pubmed: 2670893
Annu Rev Genet. 2013;47:625-46
pubmed: 24079267
Nat Ecol Evol. 2018 Mar;2(3):520-528
pubmed: 29335577
BMC Res Notes. 2016 Feb 12;9:88
pubmed: 26868221
Genome Biol. 2016 Mar 31;17:60
pubmed: 27036623
Med Trop (Mars). 1998;58(2 Suppl):7-13
pubmed: 9812303
Nature. 2014 Oct 23;514(7523):494-7
pubmed: 25141181
Lancet. 2007 Apr 7;369(9568):1196-207
pubmed: 17416264
Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13826-31
pubmed: 15358858
Annu Rev Entomol. 2005;50:505-28
pubmed: 15471529
Bioinformatics. 2010 Mar 1;26(5):589-95
pubmed: 20080505
Nat Rev Genet. 2019 Jun;20(6):323-340
pubmed: 30953039
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Microbiology (Reading). 2014 Dec;160(Pt 12):2710-2717
pubmed: 25234474
Nature. 2018 May;557(7705):369-374
pubmed: 29743675
Nucleic Acids Res. 2012 Jan;40(1):e3
pubmed: 22021376
Nature. 2000 Oct 19;407(6806):903-6
pubmed: 11057668
BMC Evol Biol. 2007 Nov 08;7:214
pubmed: 17996036
Nat Genet. 2011 May;43(5):491-8
pubmed: 21478889
Infect Immun. 2006 Jul;74(7):3727-41
pubmed: 16790745
Clin Infect Dis. 2012 Dec;55(11):1586-8
pubmed: 22918996
Elife. 2016 Jan 21;5:e12994
pubmed: 26795402
Bioinformatics. 2013 Jul 01;29(13):1682-4
pubmed: 23613487
Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):E11790-E11797
pubmed: 30478041
Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130624
pubmed: 25487342
Fly (Austin). 2012 Apr-Jun;6(2):80-92
pubmed: 22728672
Proc Natl Acad Sci U S A. 2019 Jun 18;116(25):12363-12372
pubmed: 31164419
Cell. 2015 Oct 22;163(3):571-82
pubmed: 26496604
Infect Immun. 1996 Jan;64(1):375-9
pubmed: 8557370
Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):E746-52
pubmed: 21876176
EMBO J. 1997 Sep 1;16(17):5376-85
pubmed: 9311997
PLoS One. 2007 Aug 22;2(8):e770
pubmed: 17712418
Infect Immun. 2009 Jun;77(6):2242-50
pubmed: 19289506
Nature. 2001 Oct 4;413(6855):523-7
pubmed: 11586360
Nat Commun. 2018 Jun 8;9(1):2234
pubmed: 29884871
Proc Natl Acad Sci U S A. 1999 Nov 23;96(24):14043-8
pubmed: 10570195
Clin Microbiol Rev. 1997 Jan;10(1):35-66
pubmed: 8993858
Genome Announc. 2015 Sep 17;3(5):
pubmed: 26383663
Genome Biol. 2019 Dec 16;20(1):280
pubmed: 31842945
PLoS Pathog. 2010 Oct 07;6(10):e1001134
pubmed: 20949072
J Bacteriol. 2004 Aug;186(15):5147-52
pubmed: 15262951
Proc Natl Acad Sci U S A. 2018 Feb 6;115(6):1304-1309
pubmed: 29339508
J Bacteriol. 2009 Dec;191(24):7628-9
pubmed: 19820101
Proc Biol Sci. 2016 May 11;283(1830):
pubmed: 27170724
PLoS Pathog. 2015 Jun 16;11(6):e1004969
pubmed: 26080006
Nature. 2014 Feb 13;506(7487):225-9
pubmed: 24522598
Proc Biol Sci. 2015 Feb 7;282(1800):20141846
pubmed: 25540277
Lancet Infect Dis. 2014 Apr;14(4):319-26
pubmed: 24480148
Front Microbiol. 2018 May 25;9:1106
pubmed: 29887859
Nature. 2011 Oct 12;478(7370):506-10
pubmed: 21993626
Mol Biol Evol. 2005 May;22(5):1185-92
pubmed: 15703244
Mol Biol Evol. 2016 Nov;33(11):2911-2923
pubmed: 27578768
Cell Host Microbe. 2016 Jun 8;19(6):874-81
pubmed: 27281573
Mol Biol Evol. 2016 Jul;33(7):1870-4
pubmed: 27004904
Nat Genet. 2010 Dec;42(12):1140-3
pubmed: 21037571
J Bacteriol. 2006 Jun;188(12):4453-63
pubmed: 16740952
Proc Biol Sci. 2014 Feb 12;281(1780):20133159
pubmed: 24523275
Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):3020-5
pubmed: 25713390
PLoS Negl Trop Dis. 2017 Sep 5;11(9):e0005887
pubmed: 28873412
J Biol Chem. 1991 Jan 15;266(2):815-23
pubmed: 1824701