Widening of the genetic and clinical spectrum of Lamb-Shaffer syndrome, a neurodevelopmental disorder due to SOX5 haploinsufficiency.


Journal

Genetics in medicine : official journal of the American College of Medical Genetics
ISSN: 1530-0366
Titre abrégé: Genet Med
Pays: United States
ID NLM: 9815831

Informations de publication

Date de publication:
03 2020
Historique:
received: 05 06 2019
accepted: 10 09 2019
revised: 06 09 2019
pubmed: 4 10 2019
medline: 4 2 2021
entrez: 4 10 2019
Statut: ppublish

Résumé

Lamb-Shaffer syndrome (LAMSHF) is a neurodevelopmental disorder described in just over two dozen patients with heterozygous genetic alterations involving SOX5, a gene encoding a transcription factor regulating cell fate and differentiation in neurogenesis and other discrete developmental processes. The genetic alterations described so far are mainly microdeletions. The present study was aimed at increasing our understanding of LAMSHF, its clinical and genetic spectrum, and the pathophysiological mechanisms involved. Clinical and genetic data were collected through GeneMatcher and clinical or genetic networks for 41 novel patients harboring various types ofSOX5 alterations. Functional consequences of selected substitutions were investigated. Microdeletions and truncating variants occurred throughout SOX5. In contrast, most missense variants clustered in the pivotal SOX-specific high-mobility-group domain. The latter variants prevented SOX5 from binding DNA and promoting transactivation in vitro, whereas missense variants located outside the high-mobility-group domain did not. Clinical manifestations and severity varied among patients. No clear genotype-phenotype correlations were found, except that missense variants outside the high-mobility-group domain were generally better tolerated. This study extends the clinical and genetic spectrum associated with LAMSHF and consolidates evidence that SOX5 haploinsufficiency leads to variable degrees of intellectual disability, language delay, and other clinical features.

Identifiants

pubmed: 31578471
doi: 10.1038/s41436-019-0657-0
pii: S1098-3600(21)01236-3
pmc: PMC9063678
mid: NIHMS1067887
doi:

Substances chimiques

DNA-Binding Proteins 0
SOX5 protein, human 0
SOXD Transcription Factors 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

524-537

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : NIAMS NIH HHS
ID : R01 AR072649
Pays : United States

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Auteurs

Ash Zawerton (A)

Department of Cellular & Molecular Medicine, Cleveland Clinic Lerner Research Institute, Cleveland, OH, USA.

Cyril Mignot (C)

INSERM U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, Paris, France.
AP-HP, Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique; Centre de Référence Déficiences Intellectuelles de Causes Rares, GRC UPMC « Déficience Intellectuelle et Autisme », Paris, France.

Ashley Sigafoos (A)

Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.

Patrick R Blackburn (PR)

Center for Individualized Medicine, Department of Health Science Research, and Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.

Abdul Haseeb (A)

Department of Surgery, Division of Orthopaedic Surgery, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.

Kirsty McWalter (K)

GeneDx, Gaithersburg, MD, USA.

Shoji Ichikawa (S)

Department of Clinical Diagnostics, Ambry Genetics, Aliso Viejo, CA, USA.

Caroline Nava (C)

INSERM U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, Paris, France.
AP-HP, Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique; Centre de Référence Déficiences Intellectuelles de Causes Rares, GRC UPMC « Déficience Intellectuelle et Autisme », Paris, France.

Boris Keren (B)

INSERM U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, Paris, France.
AP-HP, Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique; Centre de Référence Déficiences Intellectuelles de Causes Rares, GRC UPMC « Déficience Intellectuelle et Autisme », Paris, France.

Perrine Charles (P)

AP-HP, Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique; Centre de Référence Déficiences Intellectuelles de Causes Rares, GRC UPMC « Déficience Intellectuelle et Autisme », Paris, France.

Isabelle Marey (I)

AP-HP, Hôpital Pitié-Salpêtrière, Département de Génétique et de Cytogénétique; Centre de Référence Déficiences Intellectuelles de Causes Rares, GRC UPMC « Déficience Intellectuelle et Autisme », Paris, France.

Anne-Claude Tabet (AC)

Genetics Department, Robert Debré Hospital, APHP, Paris, France.
Human Genetics and Cognitive Functions, Institut Pasteur, Paris, France.

Jonathan Levy (J)

Genetics Department, Robert Debré Hospital, APHP, Paris, France.

Laurence Perrin (L)

Genetics Department, Robert Debré Hospital, APHP, Paris, France.

Andreas Hartmann (A)

INSERM U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, Paris, France.
APHP, Department of Neurology, Hôpital de la Pitié-Salpêtrière, Paris, France.

Gaetan Lesca (G)

Service de Génétique, Hospices Civils de Lyon - GHE, Lyon, France.
CNRS UMR 5292, INSERM U1028, CNRL, and Université Claude Bernard Lyon 1, GHE, Lyon, France.

Caroline Schluth-Bolard (C)

Service de Génétique, Hospices Civils de Lyon - GHE, Lyon, France.
CNRS UMR 5292, INSERM U1028, CNRL, and Université Claude Bernard Lyon 1, GHE, Lyon, France.

Pauline Monin (P)

Service de Génétique, Hospices Civils de Lyon - GHE, Lyon, France.

Sophie Dupuis-Girod (S)

Service de Génétique, Hospices Civils de Lyon - GHE, Lyon, France.
Centre de référence pour la maladie de Rendu-Osler, Bron, France.

Maria J Guillen Sacoto (MJ)

GeneDx, Gaithersburg, MD, USA.

Rhonda E Schnur (RE)

GeneDx, Gaithersburg, MD, USA.

Zehua Zhu (Z)

GeneDx, Gaithersburg, MD, USA.

Alice Poisson (A)

GénoPsy, Reference Center for Diagnosis and Management of Genetic Psychiatric Disorders, Centre Hospitalier le Vinatier and EDR-Psy Team (CNRS & Lyon 1 Claude Bernard University), Lyon, France.

Salima El Chehadeh (S)

Département de Génétique Médicale, CHU de Hautepierre, Strasbourg, France.

Yves Alembik (Y)

Département de Génétique Médicale, CHU de Hautepierre, Strasbourg, France.

Ange-Line Bruel (AL)

INSERM 1231 LNC, Génétique des Anomalies du Développement, Université de Bourgogne-Franche Comté, Dijon, France.
FHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.

Daphné Lehalle (D)

INSERM 1231 LNC, Génétique des Anomalies du Développement, Université de Bourgogne-Franche Comté, Dijon, France.
Centre de Génétique et Centre de Référence Maladies Rares «Anomalies du Développement de l'Interrégion Est», Hôpital d'Enfants, CHU Dijon Bourgogne, Dijon, France.

Sophie Nambot (S)

INSERM 1231 LNC, Génétique des Anomalies du Développement, Université de Bourgogne-Franche Comté, Dijon, France.
Centre de Génétique et Centre de Référence Maladies Rares «Anomalies du Développement de l'Interrégion Est», Hôpital d'Enfants, CHU Dijon Bourgogne, Dijon, France.

Sébastien Moutton (S)

INSERM 1231 LNC, Génétique des Anomalies du Développement, Université de Bourgogne-Franche Comté, Dijon, France.
Centre de Génétique et Centre de Référence Maladies Rares «Anomalies du Développement de l'Interrégion Est», Hôpital d'Enfants, CHU Dijon Bourgogne, Dijon, France.

Sylvie Odent (S)

CHU de Rennes, service de génétique clinique, Rennes, France.
Univ Rennes, CNRS, IGDR, UMR 6290, Rennes, France.

Sylvie Jaillard (S)

Univ Rennes, CHU Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, Rennes, France.

Christèle Dubourg (C)

Univ Rennes, CNRS, IGDR, UMR 6290, Rennes, France.
Service de Génétique Moléculaire et Génomique, CHU, Rennes, France.

Yvonne Hilhorst-Hofstee (Y)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, Netherlands.

Tina Barbaro-Dieber (T)

Cook Childrens Medical Center, Fort Worth, TX, USA.

Lucia Ortega (L)

Cook Childrens Medical Center, Fort Worth, TX, USA.

Elizabeth J Bhoj (EJ)

Department of Clinical Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.

Diane Masser-Frye (D)

Rady Children's Hospital San Diego, Division of Genetics and Dysmorphology, San Diego, CA, USA.

Lynne M Bird (LM)

Rady Children's Hospital San Diego, Division of Genetics and Dysmorphology, San Diego, CA, USA.
Department of Pediatrics, University of California-San Diego, San Diego, CA, USA.

Kristin Lindstrom (K)

Division of Genetics and Metabolism, Phoenix Children's Hospital, Phoenix, AZ, USA.

Keri M Ramsey (KM)

Translational Genomics Research Institute (TGen), Center for Rare Childhood Disorders, Phoenix, AZ, USA.

Vinodh Narayanan (V)

Translational Genomics Research Institute (TGen), Center for Rare Childhood Disorders, Phoenix, AZ, USA.

Emily Fassi (E)

Division of Genetics and Genomic Medicine, Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.

Marcia Willing (M)

Division of Genetics and Genomic Medicine, Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.

Trevor Cole (T)

West Midlands Regional Genetics Service and Birmingham Health Partners, Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.

Claire G Salter (CG)

West Midlands Regional Genetics Service and Birmingham Health Partners, Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.
RILD Wellcome Wolfson Centre, Royal Devon and Exeter NHS Foundation Trust, Exeter, UK.

Rhoda Akilapa (R)

North West Thames Regional Genetics Service, Northwick Park Hospital, Harrow, London, UK.

Anthony Vandersteen (A)

IWK Health Centre, Dalhousie University, Halifax, NS, Canada.

Natalie Canham (N)

North West Thames Regional Genetics Service, Northwick Park Hospital, London, UK.
Cheshire & Merseyside Regional Genetics Service, Liverpool Women's Hospital, Liverpool, UK.

Patrick Rump (P)

Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.

Erica H Gerkes (EH)

Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.

Jolien S Klein Wassink-Ruiter (JS)

Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.

Emilia Bijlsma (E)

Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.

Mariëtte J V Hoffer (MJV)

Department of Clinical Genetics, Leiden University Medical Center, Leiden, Netherlands.

Marcelo Vargas (M)

Gillette Children's Specialty Healthcare, St. Paul, MN, USA.
Children's Minnesota, Minneapolis, MN, USA.

Antonina Wojcik (A)

Gillette Children's Specialty Healthcare, St. Paul, MN, USA.
Children's Minnesota, Minneapolis, MN, USA.

Florian Cherik (F)

Service de génétique clinique, Centre de Référence Maladies Rares «Anomalies du Développement et syndromes malformatifs du Sud-Est", CHU de Clermont-Ferrand, Clermont-Ferrand, France.

Christine Francannet (C)

Service de génétique clinique, Centre de Référence Maladies Rares «Anomalies du Développement et syndromes malformatifs du Sud-Est", CHU de Clermont-Ferrand, Clermont-Ferrand, France.

Jill A Rosenfeld (JA)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX, USA.

Keren Machol (K)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX, USA.

Daryl A Scott (DA)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX, USA.

Carlos A Bacino (CA)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX, USA.

Xia Wang (X)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX, USA.

Gary D Clark (GD)

Pediatrics-Neurology, Baylor College of Medicine, Houston, TX, USA.

Marta Bertoli (M)

Northern Genetics Service-Newcastle upon Tyne NHS Foundation Trust, Newcastle upon Tyne, UK.

Simon Zwolinski (S)

Northern Genetics Service-Newcastle upon Tyne NHS Foundation Trust, Newcastle upon Tyne, UK.

Rhys H Thomas (RH)

Institute of Neuroscience, Newcastle University, Framlington Place, Newcastle upon Tyne, UK.
Department of Neurology, Royal Victoria Infirmary, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.

Ela Akay (E)

Department of Neurology, Royal Victoria Infirmary, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.

Richard C Chang (RC)

Division of Metabolic Disorders, Children's Hospital of Orange County (CHOC), Orange, CA, USA.

Rebekah Bressi (R)

Division of Metabolic Disorders, Children's Hospital of Orange County (CHOC), Orange, CA, USA.

Rossana Sanchez Russo (R)

Department of Human Genetics, Emory Universit, Atlanta, GA, USA.

Myriam Srour (M)

Division of Pediatric Neurology, Department of Pediatrics, Montreal Children's Hospital, McGill University Health Center, Montreal, QC, Canada.

Laura Russell (L)

Division of Medical Genetics, Department of Specialized Medicine, McGill University, Montreal, QC, Canada.

Anne-Marie E Goyette (AE)

Child Development Program, Department of Pediatrics, Montreal Children's Hospital, McGill University Health Center, Montreal, QC, Canada.

Lucie Dupuis (L)

Division of Clinical and Metabolic Genetics, The Hospital for Sick Children and University of Toronto, Toronto, ON, Canada.

Roberto Mendoza-Londono (R)

Division of Clinical and Metabolic Genetics, The Hospital for Sick Children and University of Toronto, Toronto, ON, Canada.

Catherine Karimov (C)

Children's hospital of Los Angeles, Los Angeles, CA, USA.

Maries Joseph (M)

Medical Genetics and Metabolism, Valley Children's Hospital, Madera, CA, USA.

Mathilde Nizon (M)

CHU Nantes, Service de Génétique Médicale, Nantes, France.
INSERM, CNRS, UNIV Nantes, l'institut du thorax, Nantes, France.

Benjamin Cogné (B)

CHU Nantes, Service de Génétique Médicale, Nantes, France.
INSERM, CNRS, UNIV Nantes, l'institut du thorax, Nantes, France.

Alma Kuechler (A)

Institut für Humangenetik, Universitätsklinikum Essen, Universität Duisburg-Essen, Essen, Germany.

Amélie Piton (A)

Laboratoire de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Strasbourg, France.
IGBMC, CNRS UMR 7104/INSERM U964/Université de Strasbourg, Illkirch, France.

Eric W Klee (EW)

Center for Individualized Medicine, Department of Health Science Research, and Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
Department of Clinical Genomics, Mayo Clinic, Rochester, MN, USA.

Véronique Lefebvre (V)

Department of Surgery, Division of Orthopaedic Surgery, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. lefebvrev1@email.chop.edu.

Karl J Clark (KJ)

Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.

Christel Depienne (C)

INSERM U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, Paris, France. christel.depienne@uni-due.de.
Institut für Humangenetik, Universitätsklinikum Essen, Universität Duisburg-Essen, Essen, Germany. christel.depienne@uni-due.de.
IGBMC, CNRS UMR 7104/INSERM U964/Université de Strasbourg, Illkirch, France. christel.depienne@uni-due.de.

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