A Unified Description of Intrinsically Disordered Protein Dynamics under Physiological Conditions Using NMR Spectroscopy.
Animals
Intrinsically Disordered Proteins
/ chemistry
MAP Kinase Kinase 4
/ chemistry
Nitrogen Isotopes
/ chemistry
Nuclear Magnetic Resonance, Biomolecular
Nucleoproteins
/ chemistry
Oocytes
/ chemistry
Protein Conformation
Protein Domains
Sendai virus
/ chemistry
Viral Proteins
/ chemistry
Xenopus laevis
Journal
Journal of the American Chemical Society
ISSN: 1520-5126
Titre abrégé: J Am Chem Soc
Pays: United States
ID NLM: 7503056
Informations de publication
Date de publication:
06 11 2019
06 11 2019
Historique:
pubmed:
9
10
2019
medline:
28
10
2020
entrez:
9
10
2019
Statut:
ppublish
Résumé
Intrinsically disordered proteins (IDPs) are flexible biomolecules whose essential functions are defined by their dynamic nature. Nuclear magnetic resonance (NMR) spectroscopy is ideally suited to the investigation of this behavior at atomic resolution. NMR relaxation is increasingly used to detect conformational dynamics in free and bound forms of IDPs under conditions approaching physiological, although a general framework providing a quantitative interpretation of these exquisitely sensitive probes as a function of experimental conditions is still lacking. Here, measuring an extensive set of relaxation rates sampling multiple-time-scale dynamics over a broad range of crowding conditions, we develop and test an integrated analytical description that accurately portrays the motion of IDPs as a function of the intrinsic properties of the crowded molecular environment. In particular we observe a strong dependence of both short-range and long-range motional time scales of the protein on the friction of the solvent. This tight coupling between the dynamic behavior of the IDP and its environment allows us to develop analytical expressions for protein motions and NMR relaxation properties that can be accurately applied over a vast range of experimental conditions. This unified dynamic description provides new insight into the physical behavior of IDPs, extending our ability to quantitatively investigate their conformational dynamics under complex environmental conditions, and accurately predicting relaxation rates reporting on motions on time scales up to tens of nanoseconds, both
Identifiants
pubmed: 31591893
doi: 10.1021/jacs.9b09002
doi:
Substances chimiques
Intrinsically Disordered Proteins
0
Nitrogen Isotopes
0
Nitrogen-15
0
Nucleoproteins
0
Viral Proteins
0
MAP Kinase Kinase 4
EC 2.7.12.2
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
17817-17829Subventions
Organisme : NIBIB NIH HHS
ID : R01 EB007047
Pays : United States