Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
16 10 2019
Historique:
received: 15 05 2019
accepted: 27 08 2019
entrez: 18 10 2019
pubmed: 18 10 2019
medline: 25 8 2020
Statut: epublish

Résumé

Natural sulfide rich deposits are common in coastal areas worldwide, including along the Baltic Sea coast. When artificial drainage exposes these deposits to atmospheric oxygen, iron sulfide minerals in the soils are rapidly oxidized. This process turns the potential acid sulfate soils into actual acid sulfate soils and mobilizes large quantities of acidity and leachable toxic metals that cause severe environmental problems. It is known that acidophilic microorganisms living in acid sulfate soils catalyze iron sulfide mineral oxidation. However, only a few studies regarding these communities have been published. In this study, we sampled the oxidized actual acid sulfate soil, the transition zone where oxidation is actively taking place, and the deepest un-oxidized potential acid sulfate soil. Nucleic acids were extracted and 16S rRNA gene amplicons, metagenomes, and metatranscriptomes generated to gain a detailed insight into the communities and their activities. The project will be of great use to microbiologists, environmental biologists, geochemists, and geologists as there is hydrological and geochemical monitoring from the site stretching back for many years.

Identifiants

pubmed: 31619684
doi: 10.1038/s41597-019-0222-3
pii: 10.1038/s41597-019-0222-3
pmc: PMC6795848
doi:

Substances chimiques

Minerals 0
RNA, Ribosomal, 16S 0
Soil 0
Sulfates 0

Types de publication

Dataset Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

207

Subventions

Organisme : Maj ja Tor Nesslingin Säätiö (Maj and Tor Nessling Foundation)
ID : 201700273
Pays : International
Organisme : Maj ja Tor Nesslingin Säätiö (Maj and Tor Nessling Foundation)
ID : 201800502
Pays : International
Organisme : Vetenskapsrådet (Swedish Research Council)
ID : 2017-00688
Pays : International
Organisme : Vetenskapsrådet (Swedish Research Council)
ID : 2017-00688
Pays : International
Organisme : Svenska Forskningsrådet Formas (Swedish Research Council Formas)
ID : 2018-00760
Pays : International
Organisme : Sveriges Geologiska Undersökning (Geological Survey of Sweden)
ID : 36-1878/2017
Pays : International

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Auteurs

Eva Högfors-Rönnholm (E)

Research and Development, Novia University of Applied Sciences, Vaasa, 65200, Finland. eva.hogfors-ronnholm@novia.fi.

Margarita Lopez-Fernandez (M)

Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.

Stephan Christel (S)

Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.

Diego Brambilla (D)

Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.

Marcel Huntemann (M)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Alicia Clum (A)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Brian Foster (B)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Bryce Foster (B)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Simon Roux (S)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Krishnaveni Palaniappan (K)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Neha Varghese (N)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Supratim Mukherjee (S)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

T B K Reddy (TBK)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Chris Daum (C)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Alex Copeland (A)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

I-Min A Chen (IA)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Natalia N Ivanova (NN)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Nikos C Kyrpides (NC)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Miranda Harmon-Smith (M)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Emiley A Eloe-Fadrosh (EA)

Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.

Daniel Lundin (D)

Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.

Sten Engblom (S)

Research and Development, Novia University of Applied Sciences, Vaasa, 65200, Finland.

Mark Dopson (M)

Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.

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Classifications MeSH