BRCA1 intronic Alu elements drive gene rearrangements and PARP inhibitor resistance.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
11 12 2019
Historique:
received: 16 03 2018
accepted: 14 11 2019
entrez: 13 12 2019
pubmed: 13 12 2019
medline: 12 3 2020
Statut: epublish

Résumé

BRCA1 mutant carcinomas are sensitive to PARP inhibitor (PARPi) therapy; however, resistance arises. BRCA1 BRCT domain mutant proteins do not fold correctly and are subject to proteasomal degradation, resulting in PARPi sensitivity. In this study, we show that cell lines and patient-derived tumors, with highly disruptive BRCT domain mutations, have readily detectable BRCA1 protein expression, and are able to proliferate in the presence of PARPi. Peptide analyses reveal that chemo-resistant cancers contain residues encoded by BRCA1 intron 15. Mechanistically, cancers with BRCT domain mutations harbor BRCA1 gene breakpoints within or adjacent to Alu elements in intron 15; producing partial gene duplications, inversions and translocations, and terminating transcription prior to the mutation-containing BRCT domain. BRCA1 BRCT domain-deficient protein isoforms avoid mutation-induced proteasomal degradation, support homology-dependent DNA repair, and promote PARPi resistance. Taken together, Alu-mediated BRCA1 gene rearrangements are responsible for generating hypomorphic proteins, and may represent a biomarker of PARPi resistance.

Identifiants

pubmed: 31827092
doi: 10.1038/s41467-019-13530-6
pii: 10.1038/s41467-019-13530-6
pmc: PMC6906494
doi:

Substances chimiques

Antineoplastic Agents 0
BRCA1 Protein 0
BRCA1 protein, human 0
Poly(ADP-ribose) Polymerase Inhibitors 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

5661

Subventions

Organisme : NCI NIH HHS
ID : R01 CA214799
Pays : United States
Organisme : Center for Strategic Scientific Initiatives, National Cancer Institute (NCI Center for Strategic Scientific Initiatives)
ID : R01CA214799
Pays : International
Organisme : NCI NIH HHS
ID : P50 CA083638
Pays : United States

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Auteurs

Yifan Wang (Y)

Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Andrea J Bernhardy (AJ)

Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Joseph Nacson (J)

Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Lewis Katz School of Medicine, Temple University, Philadelphia, PA, 19111, USA.

John J Krais (JJ)

Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Yin-Fei Tan (YF)

Genomics Facility, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Emmanuelle Nicolas (E)

Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Genomics Facility, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Marc R Radke (MR)

Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA.

Elizabeth Handorf (E)

Bioinformatics and Statistics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Alba Llop-Guevara (A)

Experimental Therapeutics Group, Vall d'Hebron Institute of Oncology, Barcelona, Spain.

Judith Balmaña (J)

Hereditary Cancer Genetics Group, Vall d'Hebron Institute of Oncology, Barcelona, Spain.

Elizabeth M Swisher (EM)

Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA.

Violeta Serra (V)

Experimental Therapeutics Group, Vall d'Hebron Institute of Oncology, Barcelona, Spain.

Suraj Peri (S)

Bioinformatics and Statistics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Neil Johnson (N)

Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA. neil.johnson@fccc.edu.

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Classifications MeSH