Performance and Accuracy of Four Open-Source Tools for

Computer Simulation Genome, Bacterial Germany High-Throughput Nucleotide Sequencing Retrospective Studies Salmonella / genetics Serotyping / methods Whole Genome Sequencing
O antigen Salmonella serotyping serovar prediction whole-genome sequencing

Journal

Applied and environmental microbiology
ISSN: 1098-5336
Titre abrégé: Appl Environ Microbiol
Pays: United States
ID NLM: 7605801

Informations de publication

Date de publication:
18 02 2020
Historique:
received: 02 10 2019
accepted: 16 12 2019
pubmed: 22 12 2019
medline: 3 10 2020
entrez: 22 12 2019
Statut: epublish

Résumé

We compared the performance of four open-source

Identifiants

DOI: 10.1128/AEM.02265-19 PMID: 31862714 PMC: PMC7028957
pubmed: 31862714
pii: AEM.02265-19
doi: 10.1128/AEM.02265-19
pmc: PMC7028957
pii:
doi:

Types de publication

Comparative Study Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Commentaires et corrections

Type : CommentIn
Type : CommentIn

Informations de copyright

Copyright © 2020 Uelze et al.

Références

Int J Infect Dis. 2016 Aug;49:134-40
pubmed: 27343985
J Clin Microbiol. 2015 May;53(5):1685-92
pubmed: 25762776
Int J Food Microbiol. 2015 Jan 16;193:8-14
pubmed: 25462917
Front Microbiol. 2017 Jun 26;8:1068
pubmed: 28694792
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595
pubmed: 28594827
Front Microbiol. 2017 Jun 09;8:1044
pubmed: 28649236
Adv Food Nutr Res. 2018;86:137-179
pubmed: 30077221
PLoS Pathog. 2012;8(6):e1002776
pubmed: 22737074
Front Microbiol. 2019 Apr 24;10:835
pubmed: 31068916
Appl Environ Microbiol. 2019 Jul 1;85(14):
pubmed: 31053586
NPJ Sci Food. 2018 Dec 18;2:23
pubmed: 31304272
Microb Genom. 2018 Feb;4(2):
pubmed: 29338812
Res Microbiol. 2010 Jan-Feb;161(1):26-9
pubmed: 19840847
Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5
pubmed: 27079975
Appl Environ Microbiol. 2019 Nov 14;85(23):
pubmed: 31540993
Genome Med. 2014 Nov 20;6(11):90
pubmed: 25422674
PeerJ. 2016 Apr 05;4:e1752
pubmed: 27069781
Nucleic Acids Res. 2012 May;40(10):e72
pubmed: 22323520
PeerJ. 2016 Aug 17;4:e2308
pubmed: 27602279
Bioinformatics. 2018 Sep 1;34(17):i884-i890
pubmed: 30423086
PLoS One. 2016 Jan 22;11(1):e0147101
pubmed: 26800248
Front Microbiol. 2018 Dec 13;9:2993
pubmed: 30619114
Front Microbiol. 2017 Jul 31;8:1345
pubmed: 28824552
Infect Genet Evol. 2002 Oct;2(1):39-45
pubmed: 12797999

Auteurs

Laura Uelze (L)

German Federal Institute for Risk Assessment (BfR), Berlin, Germany.
ORCID: 0000-0002-6020-3841

Maria Borowiak (M)

German Federal Institute for Risk Assessment (BfR), Berlin, Germany.

Carlus Deneke (C)

German Federal Institute for Risk Assessment (BfR), Berlin, Germany.

István Szabó (I)

German Federal Institute for Risk Assessment (BfR), Berlin, Germany.

Jennie Fischer (J)

German Federal Institute for Risk Assessment (BfR), Berlin, Germany.

Simon H Tausch (SH)

German Federal Institute for Risk Assessment (BfR), Berlin, Germany.

Burkhard Malorny (B)

German Federal Institute for Risk Assessment (BfR), Berlin, Germany burkhard.malorny@bfr.bund.de.

Articles similaires

Comprehensive comparative analysis and development of molecular markers for Lasianthus species based on complete chloroplast genome sequences.

Yue Zhang, Meifang Song, Deying Tang et al.
1.00
Genome, Chloroplast Phylogeny Genetic Markers Base Composition High-Throughput Nucleotide Sequencing

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female

Vancomycin-associated DRESS demonstrates delay in AST abnormalities.

Ahmed Hussein, Kateri L Schoettinger, Jourdan Hydol-Smith et al.
1.00
Humans Drug Hypersensitivity Syndrome Vancomycin Female Male

Prognostic value of the systemic immune-inflammation index in lung cancer patients receiving immune checkpoint inhibitors: A meta-analysis.

Yanhui Yang, Ji Li, Yi Wang et al.
1.00
Humans Immune Checkpoint Inhibitors Lung Neoplasms Prognosis Inflammation

Classifications MeSH

questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Simulation numérique › Performance and Accuracy of Four Open-Source Tools for
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome bactérien › Performance and Accuracy of Four Open-Source Tools for
questionsmedicales.fr › Régions géographiques › Europe › Allemagne › Performance and Accuracy of Four Open-Source Tools for
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Séquençage nucléotidique à haut débit › Performance and Accuracy of Four Open-Source Tools for
questionsmedicales.fr › Environnement et santé publique › Santé publique › Méthodes épidémiologiques › Caractéristiques des études épidémiologiques › Études épidémiologiques › Études de cohortes › Études rétrospectives › Performance and Accuracy of Four Open-Source Tools for
questionsmedicales.fr › Bactéries › Proteobacteria › Gammaproteobacteria › Enterobacteriaceae › Salmonella › Performance and Accuracy of Four Open-Source Tools for
questionsmedicales.fr › Techniques d'investigation › Techniques immunologiques › Tests immunologiques › Sérotypie › Performance and Accuracy of Four Open-Source Tools for
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Séquençage du génome entier › Performance and Accuracy of Four Open-Source Tools for