A human ciliopathy reveals essential functions for NEK10 in airway mucociliary clearance.


Journal

Nature medicine
ISSN: 1546-170X
Titre abrégé: Nat Med
Pays: United States
ID NLM: 9502015

Informations de publication

Date de publication:
02 2020
Historique:
received: 11 04 2019
accepted: 06 12 2019
pubmed: 22 1 2020
medline: 22 4 2020
entrez: 22 1 2020
Statut: ppublish

Résumé

Mucociliary clearance, the physiological process by which mammalian conducting airways expel pathogens and unwanted surface materials from the respiratory tract, depends on the coordinated function of multiple specialized cell types, including basal stem cells, mucus-secreting goblet cells, motile ciliated cells, cystic fibrosis transmembrane conductance regulator (CFTR)-rich ionocytes, and immune cells

Identifiants

pubmed: 31959991
doi: 10.1038/s41591-019-0730-x
pii: 10.1038/s41591-019-0730-x
pmc: PMC7018620
mid: NIHMS1546020
doi:

Substances chimiques

CFTR protein, human 0
Proteome 0
Cystic Fibrosis Transmembrane Conductance Regulator 126880-72-6
NIMA-Related Kinases EC 2.7.11.1
Nek10 protein, human EC 2.7.11.1

Types de publication

Case Reports Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

244-251

Subventions

Organisme : NCATS NIH HHS
ID : U2C TR002818
Pays : United States
Organisme : NHLBI NIH HHS
ID : U54 HL096458
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL117836
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL071798
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR000083
Pays : United States
Organisme : NIH HHS
ID : S10 OD012027
Pays : United States
Organisme : NHLBI NIH HHS
ID : K08 HL133603
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI047389
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA103866
Pays : United States
Organisme : NCI NIH HHS
ID : T32 CA009216
Pays : United States
Organisme : NIAID NIH HHS
ID : R37 AI047389
Pays : United States
Organisme : NHLBI NIH HHS
ID : T32 HL116275
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA129105
Pays : United States

Commentaires et corrections

Type : ErratumIn

Références

Tilley, A. E., Walters, M. S., Shaykhiev, R. & Crystal, R. G. Cilia dysfunction in lung disease. Annu. Rev. Physiol. 77, 379–406 (2015).
pubmed: 25386990 doi: 10.1146/annurev-physiol-021014-071931
Montoro, D. T. et al. A revised airway epithelial hierarchy includes CFTR-expressing ionocytes. Nature 560, 319–324 (2018).
pubmed: 30069044 pmcid: 6295155 doi: 10.1038/s41586-018-0393-7
Gould, C. M., Freeman, A. F. & Olivier, K. N. Genetic causes of bronchiectasis. Clin. Chest Med. 33, 249–263 (2012).
pubmed: 22640844 doi: 10.1016/j.ccm.2012.03.002
Zariwala, M. A., Knowles, M. R. & Omran, H. Genetic defects in ciliary structure and function. Annu. Rev. Physiol. 69, 423–450 (2007).
pubmed: 17059358 doi: 10.1146/annurev.physiol.69.040705.141301
Online Mendelian Inheritance in Man, OMIM (McKusick–Nathans Institute of Genetic Medicine, Johns Hopkins University, November 2019); https://www.omim.org/
Moniz, L., Dutt, P., Haider, N. & Stambolic, V. Nek family of kinases in cell cycle, checkpoint control and cancer. Cell Div. 6, 18 (2011).
pubmed: 22040655 pmcid: 3222597 doi: 10.1186/1747-1028-6-18
Thiel, C. et al. NEK1 mutations cause short-rib polydactyly syndrome type Majewski. Am. J. Hum. Genet. 88, 106–114 (2011).
pubmed: 21211617 pmcid: 3014367 doi: 10.1016/j.ajhg.2010.12.004
Smith, L. A. et al. Development of polycystic kidney disease in juvenile cystic kidney mice: insights into pathogenesis, ciliary abnormalities, and common features with human disease. J. Am. Soc. Nephrol. 17, 2821–2831 (2006).
pubmed: 16928806 doi: 10.1681/ASN.2006020136
Moniz, L. S. & Stambolic, V. Nek10 mediates G2/M cell cycle arrest and MEK autoactivation in response to UV irradiation. Mol. Cell. Biol. 31, 30–42 (2011).
pubmed: 20956560 doi: 10.1128/MCB.00648-10
Porpora, M. et al. Counterregulation of cAMP-directed kinase activities controls ciliogenesis. Nat. Commun. 9, 1224 (2018).
pubmed: 29581457 pmcid: 5964327 doi: 10.1038/s41467-018-03643-9
Fulcher, M. L., Gabriel, S., Burns, K. A., Yankaskas, J. R. & Randell, S. H. Well-differentiated human airway epithelial cell cultures. Methods Mol. Med. 107, 183–206 (2005).
pubmed: 15492373
Knowles, M. R., Zariwala, M. & Leigh, M. Primary ciliary dyskinesia. Clin. Chest Med. 37, 449–461 (2016).
pubmed: 27514592 pmcid: 4988337 doi: 10.1016/j.ccm.2016.04.008
Karczewski, K. J. et al. Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes. bioRxivorg 49, 531210 (2019).
Ostrowski, L. E., Hutchins, J. R., Zakel, K. & O’Neal, W. K. Targeting expression of a transgene to the airway surface epithelium using a ciliated cell-specific promoter. Mol. Ther. 8, 637–645 (2003).
pubmed: 14529837 doi: 10.1016/S1525-0016(03)00221-1
Liu, L. et al. Method for quantitative study of airway functional microanatomy using micro-optical coherence tomography. PLoS ONE 8, e54473 (2013).
pubmed: 23372732 pmcid: 3553101 doi: 10.1371/journal.pone.0054473
Knowles, M. R., Daniels, L. A., Davis, S. D., Zariwala, M. A. & Leigh, M. W. Primary ciliary dyskinesia. Recent advances in diagnostics, genetics, and characterization of clinical disease. Am. J. Respir. Crit. Care Med. 188, 913–922 (2013).
pubmed: 23796196 pmcid: 3826280 doi: 10.1164/rccm.201301-0059CI
He, Y., Zeng, M. Y., Yang, D., Motro, B. & Nuñez, G. NEK7 is an essential mediator of NLRP3 activation downstream of potassium efflux. Nature 530, 354–357 (2016).
pubmed: 26814970 pmcid: 4810788 doi: 10.1038/nature16959
Carrera, A. C., Alexandrov, K. & Roberts, T. M. The conserved lysine of the catalytic domain of protein kinases is actively involved in the phosphotransfer reaction and not required for anchoring ATP. Proc. Natl Acad. Sci. USA 90, 442–446 (1993).
pubmed: 8421674 pmcid: 45679 doi: 10.1073/pnas.90.2.442
Moniz, L. Characterization of NimA-related Kinase 10 (NEK10): A Role in Checkpoint Control. PhD thesis, Univ. of Toronto (2010).
Richards, M. W. et al. An autoinhibitory tyrosine motif in the cell-cycle-regulated Nek7 kinase is released through binding of Nek9. Mol. Cell 36, 560–570 (2009).
pubmed: 19941817 pmcid: 2807034 doi: 10.1016/j.molcel.2009.09.038
Doan, M. et al. Diagnostic potential of imaging flow cytometry. Trends Biotechnol. 36, 649–652 (2018).
pubmed: 29395345 doi: 10.1016/j.tibtech.2017.12.008
Wallmeier, J. et al. Mutations in CCNO result in congenital mucociliary clearance disorder with reduced generation of multiple motile cilia. Nat. Genet. 46, 646–651 (2014).
pubmed: 24747639 doi: 10.1038/ng.2961
Boon, M. et al. MCIDAS mutations result in a mucociliary clearance disorder with reduced generation of multiple motile cilia. Nat. Commun. 5, 4418 (2014).
pubmed: 25048963 doi: 10.1038/ncomms5418
Vladar, E. K., Nayak, J. V., Milla, C. E. & Axelrod, J. D. Airway epithelial homeostasis and planar cell polarity signaling depend on multiciliated cell differentiation. JCI Insight 1, 183 (2016).
doi: 10.1172/jci.insight.88027
Ostrowski, L. E. in Cell Biology 3rd edn, Vol. 2 (ed., Celis, J. E.) Ch. 14 (Elsevier, 2005).
Leopold, P. L., O’Mahony, M. J., Lian, X. J., Tilley, A. E., Harvey, B.-G. & Crystal, R. G. Smoking is associated with shortened airway cilia. PLoS ONE 4, e8157 (2009).
pubmed: 20016779 pmcid: 2790614 doi: 10.1371/journal.pone.0008157
Oltean, A., Schaffer, A. J., Bayly, P. V. & Brody, S. L. Quantifying ciliary dynamics during assembly reveals stepwise waveform maturation in airway cells. Am. J. Respir. Cell Mol. Biol. 59, 511–522 (2018).
pubmed: 29851510 pmcid: 6178159 doi: 10.1165/rcmb.2017-0436OC
Bottier, M., Thomas, K. A., Dutcher, S. K. & Bayly, P. V. How does cilium length affect beating? Biophys. J. 116, 1292–1304 (2019).
pubmed: 30878201 pmcid: 6451027 doi: 10.1016/j.bpj.2019.02.012
Block, H. et al. Immobilized-metal affinity chromatography (IMAC): a review. Meth. Enzymol. 463, 439–473 (2009).
doi: 10.1016/S0076-6879(09)63027-5
Ashburner, M. et al. Gene ontology: tool for the unification of biology. Nat. Genet. 25, 25–29 (2000).
pubmed: 10802651 pmcid: 3037419 doi: 10.1038/75556
The Gene Ontology Consortium. The Gene Ontology Resource: 20 years and still GOing strong. Nucleic Acids Res. 47, D330–D338 (2019).
doi: 10.1093/nar/gky1055
Ostrowski, L. E. et al. A proteomic analysis of human cilia identification of novel components. Mol. Cell Proteomics 1, 451–465 (2002).
pubmed: 12169685 doi: 10.1074/mcp.M200037-MCP200
Vieira Braga, F. A. et al. A cellular census of human lungs identifies novel cell states in health and in asthma. Nat. Med. 25, 1153–1163 (2019).
pubmed: 31209336 doi: 10.1038/s41591-019-0468-5
Tabula Muris Consortium. et al. Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature 562, 367–372 (2018).
doi: 10.1038/s41586-018-0590-4
Wloga, D. et al. Members of the NIMA-related kinase family promote disassembly of cilia by multiple mechanisms. Mol. Biol. Cell 17, 2799–2810 (2006).
pubmed: 16611747 pmcid: 1474788 doi: 10.1091/mbc.e05-05-0450
Bradley, B. A. & Quarmby, L. M. A NIMA-related kinase, Cnk2p, regulates both flagellar length and cell size in Chlamydomonas. J. Cell Sci. 118, 3317–3326 (2005).
pubmed: 16030138 doi: 10.1242/jcs.02455
Hilton, L. K., Gunawardane, K., Kim, J. W., Schwarz, M. C. & Quarmby, L. M. The kinases LF4 and CNK2 control ciliary length by feedback regulation of assembly and disassembly rates. Curr. Biol. 23, 2208–2214 (2013).
pubmed: 24184104 doi: 10.1016/j.cub.2013.09.038
Lin, H. et al. A NIMA-related kinase suppresses the flagellar instability associated with the loss of multiple axonemal structures. PLoS Genet. 11, e1005508 (2015).
pubmed: 26348919 pmcid: 4562644 doi: 10.1371/journal.pgen.1005508
Hessel, J. et al. Intraflagellar transport gene expression associated with short cilia in smoking and COPD. PLoS ONE 9, e85453 (2014).
pubmed: 24465567 pmcid: 3896362 doi: 10.1371/journal.pone.0085453
Chen, Z.-G. et al. Aberrant epithelial remodeling with impairment of cilia architecture in non-cystic fibrosis bronchiectasis. J. Thorac. Dis. 10, 1753–1764 (2018).
pubmed: 29707330 pmcid: 5906310 doi: 10.21037/jtd.2018.02.13
Neuberger, T., Burton, B., Clark, H. & Van Goor, F. Use of primary cultures of human bronchial epithelial cells isolated from cystic fibrosis patients for the pre-clinical testing of CFTR modulators. Methods Mol. Biol. 741, 39–54 (2011).
pubmed: 21594777 doi: 10.1007/978-1-61779-117-8_4
Carr, I. M. et al. Interactive visual analysis of SNP data for rapid autozygosity mapping in consanguineous families. Hum. Mutat. 27, 1041–1046 (2006).
pubmed: 16941472 doi: 10.1002/humu.20383
Hoffmann, K. & Lindner, T. H. easyLINKAGE-Plus—automated linkage analyses using large-scale SNP data. Bioinformatics 21, 3565–3567 (2005).
pubmed: 16014370 doi: 10.1093/bioinformatics/bti571
Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676–682 (2012).
pubmed: 22743772
Wang, T. et al. Identification and characterization of essential genes in the human genome. Science 350, 1096–1101 (2015).
pubmed: 26472758 pmcid: 4662922 doi: 10.1126/science.aac7041
Liu, L. et al. Imaging the subcellular structure of human coronary atherosclerosis using micro-optical coherence tomography. Nat. Med. 17, 1010–1014 (2011).
pubmed: 21743452 pmcid: 3151347 doi: 10.1038/nm.2409
Sbalzarini, I. F. & Koumoutsakos, P. Feature point tracking and trajectory analysis for video imaging in cell biology. J. Struct. Biol. 151, 182–195 (2005).
pubmed: 16043363 doi: 10.1016/j.jsb.2005.06.002
Eng, J. K., McCormack, A. L. & Yates, J. R. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5, 976–989 (1994).
pubmed: 24226387 doi: 10.1016/1044-0305(94)80016-2
Reiter, J. F. & Leroux, M. R. Genes and molecular pathways underpinning ciliopathies. Nat. Rev. Mol. Cell Biol. 18, 533–547 (2017).
pubmed: 28698599 pmcid: 5851292 doi: 10.1038/nrm.2017.60
Ishikawa, H. & Marshall, W. F. Ciliogenesis: building the cell’s antenna. Nat. Rev. Mol. Cell Biol. 12, 222–234 (2011).
pubmed: 21427764 doi: 10.1038/nrm3085
Teves, M. E., Nagarkatti-Gude, D. R., Zhang, Z. & Strauss, J. F. Mammalian axoneme central pair complex proteins: broader roles revealed by gene knockout phenotypes. Cytoskeleton 73, 3–22 (2016).
pubmed: 26785425 doi: 10.1002/cm.21271
Osinka, A. et al. Ciliary proteins: filling the gaps. Recent advances in deciphering the protein composition of motile ciliary complexes. Cells 8, 730 (2019).
pmcid: 6678824 doi: 10.3390/cells8070730
Zhao, L., Hou, Y., Picariello, T., Craige, B. & Witman, G. B. Proteome of the central apparatus of a ciliary axoneme. J. Cell Biol. 218, 2051–2070 (2019).
pubmed: 31092556 pmcid: 6548120 doi: 10.1083/jcb.201902017
Satish Tammana, T. V., Tammana, D., Diener, D. R. & Rosenbaum, J. Centrosomal protein CEP104 (Chlamydomonas FAP256) moves to the ciliary tip during ciliary assembly. J. Cell Sci. 126, 5018–5029 (2013).
pubmed: 23970417 pmcid: 3820246
Niwa, S. et al. KIF19A is a microtubule-depolymerizing kinesin for ciliary length control. Dev. Cell 23, 1167–1175 (2012).
pubmed: 23168168 doi: 10.1016/j.devcel.2012.10.016
Lai, C. K. et al. Functional characterization of putative cilia genes by high-content analysis. Mol. Biol. Cell 22, 1104–1119 (2011).
pubmed: 21289087 pmcid: 3069013 doi: 10.1091/mbc.e10-07-0596
Vasudevan, K. K. et al. Kinesin-13 regulates the quantity and quality of tubulin inside cilia. Mol. Biol. Cell 26, 478–494 (2015).
pubmed: 25501369 pmcid: 4310739 doi: 10.1091/mbc.E14-09-1354
Piao, T. et al. A microtubule depolymerizing kinesin functions during both flagellar disassembly and flagellar assembly in Chlamydomonas. Proc. Natl Acad. Sci. USA 106, 4713–4718 (2009).
pubmed: 19264963 pmcid: 2660737 doi: 10.1073/pnas.0808671106
Wang, L. et al. Flagellar regeneration requires cytoplasmic microtubule depolymerization and kinesin-13. J. Cell Sci. 126, 1531–1540 (2013).
pubmed: 23418346 doi: 10.1242/jcs.135178
Broekhuis, J. R., Verhey, K. J. & Jansen, G. Regulation of cilium length and intraflagellar transport by the RCK-kinases ICK and MOK in renal epithelial cells. PLoS ONE 9, e108470 (2014).
pubmed: 25243405 pmcid: 4171540 doi: 10.1371/journal.pone.0108470
Perez-Riverol, Y. et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data. Nucleic Acids Res. 47, D442–D450 (2019).
pubmed: 30395289 doi: 10.1093/nar/gky1106

Auteurs

Raghu R Chivukula (RR)

Division of Pulmonary and Critical Care Medicine, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA. raghu@wi.mit.edu.
Whitehead Institute for Biomedical Research, Cambridge, MA, USA. raghu@wi.mit.edu.
Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. raghu@wi.mit.edu.
Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA. raghu@wi.mit.edu.
Koch Institute for Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. raghu@wi.mit.edu.

Daniel T Montoro (DT)

Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.

Hui Min Leung (HM)

Wellman Center for Photomedicine, Massachusetts General Hospital, Boston, MA, USA.
Harvard Medical School, Boston, MA, USA.

Jason Yang (J)

Whitehead Institute for Biomedical Research, Cambridge, MA, USA.
Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.
Koch Institute for Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.

Hanan E Shamseldin (HE)

Department of Genetics, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

Martin S Taylor (MS)

Whitehead Institute for Biomedical Research, Cambridge, MA, USA.
Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.
Koch Institute for Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Department of Pathology, Massachusetts General Hospital, Boston, MA, USA.

Gerard W Dougherty (GW)

Department of General Pediatrics, University Children's Hospital Muenster, Münster, Germany.

Maimoona A Zariwala (MA)

Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Johnny Carson (J)

Department of Pediatrics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

M Leigh Anne Daniels (MLA)

Division of Pulmonary Diseases and Critical Care Medicine, Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Patrick R Sears (PR)

Cystic Fibrosis/Pulmonary Research and Treatment Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Katharine E Black (KE)

Division of Pulmonary and Critical Care Medicine, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.

Lida P Hariri (LP)

Department of Pathology, Massachusetts General Hospital, Boston, MA, USA.

Ibrahim Almogarri (I)

Department of Pediatrics, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

Evgeni M Frenkel (EM)

Whitehead Institute for Biomedical Research, Cambridge, MA, USA.
Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.
Koch Institute for Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.

Vladimir Vinarsky (V)

Division of Pulmonary and Critical Care Medicine, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.

Heymut Omran (H)

Department of General Pediatrics, University Children's Hospital Muenster, Münster, Germany.

Michael R Knowles (MR)

Cystic Fibrosis/Pulmonary Research and Treatment Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Marsico Lung Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Guillermo J Tearney (GJ)

Wellman Center for Photomedicine, Massachusetts General Hospital, Boston, MA, USA.
Harvard Medical School, Boston, MA, USA.
Department of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Harvard-MIT Division of Health Sciences and Technology, Cambridge, MA, USA.

Fowzan S Alkuraya (FS)

Department of Genetics, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia. falkuraya@kfshrc.edu.sa.

David M Sabatini (DM)

Whitehead Institute for Biomedical Research, Cambridge, MA, USA.
Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.
Koch Institute for Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.

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