Exome sequencing in newborns with congenital deafness as a model for genomic newborn screening: the Baby Beyond Hearing project.


Journal

Genetics in medicine : official journal of the American College of Medical Genetics
ISSN: 1530-0366
Titre abrégé: Genet Med
Pays: United States
ID NLM: 9815831

Informations de publication

Date de publication:
05 2020
Historique:
received: 05 10 2019
accepted: 26 12 2019
revised: 23 12 2019
pubmed: 25 1 2020
medline: 28 4 2021
entrez: 25 1 2020
Statut: ppublish

Résumé

Genomic newborn screening raises practical and ethical issues. Evidence is required to build a framework to introduce this technology safely and effectively. We investigated the choices made by a diverse group of parents with newborns when offered tiered genomic information from exome sequencing. This population-derived cohort comprised infants with congenital deafness. Parents were offered exome sequencing and choice regarding the scope of analysis. Options were choice A, diagnostic analysis only; choice B, diagnostic analysis plus childhood-onset diseases with medical actionability; or choice C, diagnostic analysis plus childhood-onset diseases with or without medical actionability. Of the 106 participants, 72 (68%) consented to receive additional findings with 29 (27.4%) selecting choice B and 43 (40.6%) opting for choice C. Family size, ethnicity, and age of infant at time of recruitment were the significant predictors of choice. Parents who opted to have additional findings analysis demonstrated less anxiety and decisional conflict. These data provide evidence from a culturally diverse population that choice around additional findings is important and the age of the infant when this choice is offered impacts on their decision. We found no evidence that offering different levels of genomic information to parents of newborns has a negative psychological impact.

Identifiants

pubmed: 31974413
doi: 10.1038/s41436-019-0745-1
pii: S1098-3600(21)00857-1
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

937-944

Références

Stark Z, Tan TY, Chong B, et al. A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders. Genet Med. 2016;18:1090–1096.
doi: 10.1038/gim.2016.1
Ackerman SL, Koenig BA. Understanding variations in secondary findings reporting practices across U.S. genome sequencing laboratories. AJOB Empir Bioeth. 2018;9:48–57.
doi: 10.1080/23294515.2017.1405095
Kalia SS, Adelman K, Bale SJ, et al. Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of the American College of Medical Genetics and Genomics. Genet Med. 2017;19:249–255.
doi: 10.1038/gim.2016.190
Committee on Bioethics, Committee on Genetics, and American College of Medical Genetics and Genomics Social, Ethical, and Legal Issues Committee. Ethical and policy issues in genetic testing and screening of children. Pediatrics. 2013;131:620–622.
doi: 10.1542/peds.2012-3680
Borry P, Evers-Kiebooms G, Cornel MC, Clarke A, Dierickx K. Genetic testing in asymptomatic minors: background considerations towards ESHG Recommendations. Eur J Hum Genet. 2009;17:711–719.
doi: 10.1038/ejhg.2009.25
Waisbren SE, Back DK, Liu C, et al. Parents are interested in newborn genomic testing during the early postpartum period. Genet Med. 2015;17:501–504.
doi: 10.1038/gim.2014.139
Goldenberg AJ, Dodson DS, Davis MM, Tarini BA. Parents’ interest in whole-genome sequencing of newborns. Genet Med. 2014;16:78–84.
doi: 10.1038/gim.2013.76
Bodian DL, Klein E, Iyer RK, et al. Utility of whole-genome sequencing for detection of newborn screening disorders in a population cohort of 1,696 neonates. Genet Med. 2016;18:221–230.
doi: 10.1038/gim.2015.111
Berg JS, Agrawal PB, Bailey DB, et al. Newborn sequencing in genomic medicine and public health. Pediatrics. 2017;139:e20162252.
doi: 10.1542/peds.2016-2252
Howard HC, Knoppers BM, Cornel MC, Wright Clayton E, Senecal K, Borry P. Whole-genome sequencing in newborn screening? A statement on the continued importance of targeted approaches in newborn screening programmes. Eur J Hum Genet. 2015;23:1593–1600.
doi: 10.1038/ejhg.2014.289
Holmes D. Europe plays catch-up on neonatal screening as US skips ahead. Nat Med. 2012;18:1596.
doi: 10.1038/nm1112-1596
Victorian Clinical Genetics Services. Newborn screening. 2019. https://www.vcgs.org.au/tests/newborn-bloodspot-screening . Accessed 11 September 2019.
Victorian Infant Hearing Screening Program. 2017. https://www.vcgs.org.au/tests/newborn-bloodspot-screening . Accessed 15 July 2017.
Downie L, Halliday JL, Burt RA, et al. A protocol for whole-exome sequencing in newborns with congenital deafness: a prospective population-based cohort. BMJ Paediatr Open. 2017;1:e000119.
doi: 10.1136/bmjpo-2017-000119
Downie L, Halliday JL, Burt RA, et al. Exome sequencing in infants with congenital hearing impairment: a population based cohort study. Eur J Hum Genet. 2019; https://doi.org/10.1038/s41431-019-0553-8 . Accessed 12 December 2019.
Halliday JL, Muller C, Charles T, et al. Offering pregnant women different levels of genetic information from prenatal chromosome microarray: a prospective study. Eur J Hum Genet. 2018;26:485–494.
doi: 10.1038/s41431-017-0084-0
Berg JS, Foreman AK, O’Daniel JM, et al. A semiquantitative metric for evaluating clinical actionability of incidental or secondary findings from genome-scale sequencing. Genet Med. 2016;18:467–475.
doi: 10.1038/gim.2015.104
Ceyhan-Birsoy O, Machini K, Lebo MS, et al. A curated gene list for reporting results of newborn genomic sequencing. Genet Med. 2017;19:809–818.
doi: 10.1038/gim.2016.193
Richards S, Aziz N, Bale S, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17:405–424.
doi: 10.1038/gim.2015.30
Chew LD, Bradley KA, Boyko EJ. Brief questions to identify patients with inadequate health literacy. Fam Med. 2004;36:588–594.
pubmed: 15343421
Marteau TM, Bekker H. The development of a six-item short-form of the state scale of the Spielberger State-Trait Anxiety Inventory (STAI). Br J Clin Psychol. 1992;31 (Pt 3):301–306.
doi: 10.1111/j.2044-8260.1992.tb00997.x
O’Connor AM. Validation of a decisional conflict scale. Med Decis Making. 1995;15:25–30.
doi: 10.1177/0272989X9501500105
Brehaut JC, O’Connor AM, Wood TJ, et al. Validation of a decision regret scale. Med Decis Making. 2003;23:281–292.
doi: 10.1177/0272989X03256005
Carleton RN, Norton MA, Asmundson GJ. Fearing the unknown: a short version of the Intolerance of Uncertainty Scale. J Anxiety Disord. 2007;21:105–117.
doi: 10.1016/j.janxdis.2006.03.014
Rigante D, Frediani B, Cantarini L. A comprehensive overview of the hereditary periodic fever syndromes. Clin Rev Allergy Immunol. 2018;54:446–453.
doi: 10.1007/s12016-016-8537-8
Youngblom E, ParianiM. Knowles JW. Familial hypercholesterolemia. In: Adam MP, Ardinger HH, Pagon RA et al., editors. GeneReviews. Seattle, WA: University of Washington; 1993.
Burnett JR, Bell DA, Hooper AJ, Hegele RA. Clinical utility gene card for: familial hypobetalipoproteinaemia (APOB)—update 2014. Eur J Hum Genet. 2015;23:890.
Stark Z, Schofield D, Martyn M, et al. Does genomic sequencing early in the diagnostic trajectory make a difference? A follow-up study of clinical outcomes and cost-effectiveness. Genet Med. 2019;21:173–180.
Petrikin JE, Cakici JA, Clark MM, et al. The NSIGHT1-randomized controlled trial: rapid whole-genome sequencing for accelerated etiologic diagnosis in critically ill infants. NPJ Genom Med. 2018;3:6.
doi: 10.1038/s41525-018-0045-8
Joseph G, Chen F, Harris-Wai J, Puck JM, Young C, Koenig BA. Parental views on expanded newborn screening using whole-genome sequencing. Pediatrics. 2016;137:S36–S46.
doi: 10.1542/peds.2015-3731H
Waisbren SE, Weipert CM, Walsh RC, Petty CR, Green RC. Psychosocial factors influencing parental interest in genomic sequencing of newborns. Pediatrics. 2016;137:S30–S35.
doi: 10.1542/peds.2015-3731G
Genetti CA, Schwartz TS, Robinson JO, et al. Parental interest in genomic sequencing of newborns: enrollment experience from the BabySeq Project. Genet Med. 2019;21:622–630.
doi: 10.1038/s41436-018-0105-6
Lakes KD, Vaughan E, Lemke A, et al. Maternal perspectives on the return of genetic results: context matters. Am J Med Genet A. 2013;161a:38–47.
doi: 10.1002/ajmg.a.35673
LeRoy BS, McCarthy Veach P, Bartels DM. Genetic counseling practice: advanced concepts and skills. Hoboken, NJ: Wiley-Blackwell; 2010.
Holm IA, Agrawal PB, Ceyhan-Birsoy O, et al. The BabySeq project: implementing genomic sequencing in newborns. BMC Pediatr. 2018;18:225.
doi: 10.1186/s12887-018-1200-1
Lewis MA, Paquin RS, Roche MI, et al. Supporting parental decisions about genomic sequencing for newborn screening: the NC NEXUS decision aid. Pediatrics. 2016;137 (Suppl 1):S16–S23.
doi: 10.1542/peds.2015-3731E
Iskrov G, Ivanov S, Wrenn S, Stefanov R. Whole-genome sequencing in newborn screening—attitudes and opinions of Bulgarian pediatricians and geneticists. Front Public Health. 2017;5:308.
doi: 10.3389/fpubh.2017.00308
Pereira S, Robinson JO, Gutierrez AM, et al. Perceived benefits, risks, and utility of newborn genomic sequencing in the BabySeq Project. Pediatrics. 2019;143 (Suppl 1):S6–S13.
doi: 10.1542/peds.2018-1099C
Anderson JA, Meyn MS, Shuman C, et al. Parents perspectives on whole genome sequencing for their children: qualified enthusiasm? J Medical Ethics. 2017;43:535–539.
doi: 10.1136/medethics-2016-103564
Ceyhan-Birsoy O, Murry JB, Machini K, et al. Interpretation of genomic sequencing results in healthy and ill newborns: results from the BabySeq Project. Am J Hum Genet. 2019;104:76–93.
doi: 10.1016/j.ajhg.2018.11.016

Auteurs

Lilian Downie (L)

Victorian Clinical Genetics Services, Melbourne, Australia.
Murdoch Children's Research Institute, Melbourne, Australia.
Royal Children's Hospital, Melbourne, Australia.
Department of Paediatrics, University of Melbourne, Melbourne, Australia.

Jane Halliday (J)

Murdoch Children's Research Institute, Melbourne, Australia.
Department of Paediatrics, University of Melbourne, Melbourne, Australia.

Sharon Lewis (S)

Murdoch Children's Research Institute, Melbourne, Australia.
Department of Paediatrics, University of Melbourne, Melbourne, Australia.

Sebastian Lunke (S)

Victorian Clinical Genetics Services, Melbourne, Australia.
Murdoch Children's Research Institute, Melbourne, Australia.
Department of Paediatrics, University of Melbourne, Melbourne, Australia.

Elly Lynch (E)

Victorian Clinical Genetics Services, Melbourne, Australia.
Murdoch Children's Research Institute, Melbourne, Australia.
Melbourne Genomics Health Alliance, Melbourne, Australia.

Melissa Martyn (M)

Murdoch Children's Research Institute, Melbourne, Australia.
Department of Paediatrics, University of Melbourne, Melbourne, Australia.
Melbourne Genomics Health Alliance, Melbourne, Australia.

Clara Gaff (C)

Department of Paediatrics, University of Melbourne, Melbourne, Australia.
Melbourne Genomics Health Alliance, Melbourne, Australia.

Anna Jarmolowicz (A)

Victorian Clinical Genetics Services, Melbourne, Australia.
Murdoch Children's Research Institute, Melbourne, Australia.

David J Amor (DJ)

Victorian Clinical Genetics Services, Melbourne, Australia. david.amor@mcri.edu.au.
Murdoch Children's Research Institute, Melbourne, Australia. david.amor@mcri.edu.au.
Royal Children's Hospital, Melbourne, Australia. david.amor@mcri.edu.au.
Department of Paediatrics, University of Melbourne, Melbourne, Australia. david.amor@mcri.edu.au.

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