Guanidine hydrochloride reactivates an ancient septin hetero-oligomer assembly pathway in budding yeast.
S. cerevisiae
biochemistry
cell biology
chaperone
chemical biology
guanidine
oligomerization
protein folding
septins
Journal
eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614
Informations de publication
Date de publication:
28 01 2020
28 01 2020
Historique:
received:
11
12
2019
accepted:
25
01
2020
pubmed:
29
1
2020
medline:
24
4
2021
entrez:
29
1
2020
Statut:
epublish
Résumé
Septin proteins evolved from ancestral GTPases and co-assemble into hetero-oligomers and cytoskeletal filaments. In For a cell to work and perform its role, it relies on molecules called proteins that are made up of chains of amino acids. Individual proteins can join together like pieces in a puzzle to form larger, more complex structures. How the protein subunits fit together depends on their individual shapes and sizes. Many cells contain proteins called septins, which can assemble into larger protein complexes that are involved in range of cellular processes. The number of subunits within these complexes differs between organisms and sometimes even between cell types in the same organism. For example, yeast typically have eight subunits within a septin protein complex and struggle to survive when the number of septin subunits is reduced to six. Whereas other organisms, including humans, can make septin protein complexes containing six or eight subunits. However, it is poorly understood how septin proteins are able to organize themselves into these different sized complexes. Now, Johnson et al. show that a chemical called guanidinium helps yeast make complexes containing six septin subunits. Guanidinium has many similarities to the amino acid arginine. Comparing septins from different species revealed that one of the septin proteins in yeast lacks a key arginine component. This led Johnson et al. to propose that when guanidinium binds to septin at the site where arginine should be, this steers the septin protein towards the shape required to make a six-subunit complex. These findings reveal a new detail of how some species evolved complexes consisting of different numbers of subunits. This work demonstrates a key difference between complexes made up of six septin proteins and complexes which are made up of eight, which may be relevant in how different human cells adapt their septin complexes for different purposes. It may also become possible to use guanidinium to treat genetic diseases that result from the loss of arginine in certain proteins.
Autres résumés
Type: plain-language-summary
(eng)
For a cell to work and perform its role, it relies on molecules called proteins that are made up of chains of amino acids. Individual proteins can join together like pieces in a puzzle to form larger, more complex structures. How the protein subunits fit together depends on their individual shapes and sizes. Many cells contain proteins called septins, which can assemble into larger protein complexes that are involved in range of cellular processes. The number of subunits within these complexes differs between organisms and sometimes even between cell types in the same organism. For example, yeast typically have eight subunits within a septin protein complex and struggle to survive when the number of septin subunits is reduced to six. Whereas other organisms, including humans, can make septin protein complexes containing six or eight subunits. However, it is poorly understood how septin proteins are able to organize themselves into these different sized complexes. Now, Johnson et al. show that a chemical called guanidinium helps yeast make complexes containing six septin subunits. Guanidinium has many similarities to the amino acid arginine. Comparing septins from different species revealed that one of the septin proteins in yeast lacks a key arginine component. This led Johnson et al. to propose that when guanidinium binds to septin at the site where arginine should be, this steers the septin protein towards the shape required to make a six-subunit complex. These findings reveal a new detail of how some species evolved complexes consisting of different numbers of subunits. This work demonstrates a key difference between complexes made up of six septin proteins and complexes which are made up of eight, which may be relevant in how different human cells adapt their septin complexes for different purposes. It may also become possible to use guanidinium to treat genetic diseases that result from the loss of arginine in certain proteins.
Identifiants
pubmed: 31990274
doi: 10.7554/eLife.54355
pii: 54355
pmc: PMC7056273
doi:
pii:
Substances chimiques
Biopolymers
0
Saccharomyces cerevisiae Proteins
0
Arginine
94ZLA3W45F
Septins
EC 3.6.1.-
Guanidine
JU58VJ6Y3B
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Alzheimer's Association
ID : NIRGD-12-241119
Pays : United States
Organisme : Agence Nationale de la Recherche
ID : ANR-10-LBX-0038
Organisme : NIGMS NIH HHS
ID : R01 GM124024
Pays : United States
Organisme : NIGMS NIH HHS
ID : R00 GM086603
Pays : United States
Organisme : Agence Nationale de la Recherche
ID : ANR-10-INSB-04
Organisme : NIGMS NIH HHS
ID : R01GM124024
Pays : United States
Organisme : National Science Foundation
ID : MCB-1615138
Informations de copyright
© 2020, Johnson et al.
Déclaration de conflit d'intérêts
CJ, MS, AW, AK, AG, AB, MM No competing interests declared
Références
Sci Rep. 2016 Jan 28;6:20007
pubmed: 26818767
Genetics. 1997 Oct;147(2):507-19
pubmed: 9335589
Methods Cell Biol. 1989;31:357-435
pubmed: 2476649
Mol Biol Cell. 2016 Feb 1;27(3):442-50
pubmed: 26680739
Bio Protoc. 2018 Mar 20;8(6):
pubmed: 29770349
Int Rev Cell Mol Biol. 2014;310:289-339
pubmed: 24725429
Science. 2006 Mar 3;311(5765):1293-7
pubmed: 16513984
BMC Cell Biol. 2008 Oct 01;9:55
pubmed: 18826657
Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16592-7
pubmed: 19805342
PLoS One. 2015 Feb 24;10(2):e0117192
pubmed: 25710177
Mol Biol Cell. 2014 May;25(10):1594-607
pubmed: 24648497
J Cell Biol. 2004 Mar 1;164(5):701-15
pubmed: 14993234
Nat Rev Mol Cell Biol. 2012 Feb 08;13(3):183-94
pubmed: 22314400
PLoS One. 2010 Sep 27;5(9):e12933
pubmed: 20885997
Dev Cell. 2011 Apr 19;20(4):540-9
pubmed: 21497764
Nature. 2007 Sep 20;449(7160):311-5
pubmed: 17637674
Cytoskeleton (Hoboken). 2019 Sep;76(9-10):457-466
pubmed: 31608568
Elife. 2017 May 08;6:
pubmed: 28481201
Muscle Nerve. 1997 Sep;20(9):1146-52
pubmed: 9270671
Biol Chem. 2014 Feb;395(2):123-41
pubmed: 24114910
Fungal Genet Biol. 2016 Sep;94:69-78
pubmed: 27422440
Fungal Genet Biol. 2015 Aug;81:41-51
pubmed: 26051489
J Struct Biol. 1999 Dec 1;128(1):82-97
pubmed: 10600563
Curr Microbiol. 2001 Jul;43(1):7-10
pubmed: 11375656
J Cell Biol. 2010 Nov 15;191(4):741-9
pubmed: 21059847
Eukaryot Cell. 2012 Mar;11(3):311-23
pubmed: 22247265
J Biol Chem. 2017 Jun 30;292(26):10899-10911
pubmed: 28476887
Mol Cell Biol. 2008 Aug;28(16):5120-37
pubmed: 18541672
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
J Mol Biol. 2002 Mar 15;317(1):41-72
pubmed: 11916378
Biochemistry. 2005 Dec 20;44(50):16695-700
pubmed: 16342959
Elife. 2017 May 25;6:
pubmed: 28541184
J Biol Chem. 1997 May 9;272(19):12384-92
pubmed: 9139684
Biochem J. 2013 Feb 15;450(1):95-105
pubmed: 23163726
J Biol Chem. 2013 Mar 8;288(10):7065-76
pubmed: 23341453
PLoS One. 2014 Mar 24;9(3):e92819
pubmed: 24664283
EMBO Rep. 2011 Oct 28;12(11):1118-26
pubmed: 21997296
Methods Mol Biol. 2016;1369:113-23
pubmed: 26519309
J Mol Biol. 2016 May 8;428(9 Pt B):1870-85
pubmed: 26608812
Mol Biol Cell. 2015 Apr 1;26(7):1323-44
pubmed: 25673805
Mol Biol Cell. 2011 Sep;22(17):3152-64
pubmed: 21737677
J Cell Biol. 2013 Dec 23;203(6):895-905
pubmed: 24344182
Trends Cell Biol. 2011 Mar;21(3):141-8
pubmed: 21177106
Dev Cell. 2018 Jul 16;46(2):204-218.e7
pubmed: 30016622
Mol Biol Cell. 2004 Oct;15(10):4568-83
pubmed: 15282341
Nat Chem Biol. 2012 Jan 15;8(3):238-45
pubmed: 22246401
Microbiology. 1996 Oct;142 ( Pt 10):2897-905
pubmed: 8885406
BMC Bioinformatics. 2008 Jan 23;9:40
pubmed: 18215316
PLoS One. 2010 Nov 02;5(11):e13799
pubmed: 21082023
Nat Methods. 2014 Mar;11(3):319-24
pubmed: 24487582
Biol Chem. 2005 Jul;386(7):643-56
pubmed: 16207085
J Mol Biol. 2010 Dec 10;404(4):711-31
pubmed: 20951708
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9
pubmed: 18424797
Nat Rev Mol Cell Biol. 2008 Jun;9(6):478-89
pubmed: 18478031
J Cell Biol. 1996 Feb;132(3):399-411
pubmed: 8636217
Pharmacol Res. 2014 May;83:38-51
pubmed: 24373832
Biochemistry. 2010 Feb 9;49(5):824-6
pubmed: 20050635
J Mol Biol. 1998 Mar 27;277(2):467-85
pubmed: 9514755
Fungal Genet Biol. 2016 Sep;94:79-87
pubmed: 27387218
Mol Biol Cell. 2006 Oct;17(10):4494-512
pubmed: 16899511
Mol Genet Genomics. 2003 Jun;269(3):304-11
pubmed: 12684878
Fungal Genet Biol. 2013 Sep-Oct;58-59:80-90
pubmed: 23973959
J Comput Chem. 2010 Jan 30;31(2):455-61
pubmed: 19499576
Biol Chem. 2014 Feb;395(2):169-80
pubmed: 24246286
Virus Res. 2012 Oct;169(1):72-9
pubmed: 22814431
Genetics. 1981 Aug;98(4):691-711
pubmed: 7037537
Biochem Cell Biol. 2010 Dec;88(6):969-79
pubmed: 21102659
Mol Biol Cell. 2004 Dec;15(12):5551-64
pubmed: 15385632
BMC Evol Biol. 2019 Jan 7;19(1):4
pubmed: 30616529
Nat Methods. 2019 Jul;16(7):565-566
pubmed: 31217592
Mol Cell. 2017 Jan 19;65(2):220-230
pubmed: 27989440
Curr Biol. 2002 Nov 19;12(22):R788-90
pubmed: 12445407
Biochemistry. 2000 Aug 22;39(33):10055-65
pubmed: 10955993
Trends Cell Biol. 2003 Aug;13(8):403-9
pubmed: 12888292
Mol Microbiol. 2010 Feb;75(3):658-75
pubmed: 19943902
PLoS One. 2013 May 14;8(5):e63843
pubmed: 23691103
Cell Cycle. 2016 Sep 16;15(18):2441-53
pubmed: 27398993
Mol Pharmacol. 2011 Dec;80(6):1085-95
pubmed: 21926190
Cold Spring Harb Symp Quant Biol. 2009;74:103-8
pubmed: 20375316
Mol Biol Cell. 2002 Aug;13(8):2732-46
pubmed: 12181342
J Cell Biol. 2016 Feb 29;212(5):515-29
pubmed: 26929450
BMC Evol Biol. 2007 Jul 01;7:103
pubmed: 17601340
Genetics. 2014 Mar;196(3):711-27
pubmed: 24398420
Genetics. 2007 Sep;177(1):215-29
pubmed: 17603111
J Cell Sci. 2015 Mar 1;128(5):923-34
pubmed: 25588830
J Struct Biol. 1996 Jan-Feb;116(1):190-9
pubmed: 8742743
Cytoskeleton (Hoboken). 2019 Sep;76(9-10):449-456
pubmed: 31614074
J Biol Chem. 2000 Dec 8;275(49):38127-30
pubmed: 11006267
Biochemistry. 1996 Dec 17;35(50):16174-9
pubmed: 8973189
Methods Cell Biol. 2016;136:1-19
pubmed: 27473900
Biochemistry. 2002 Nov 12;41(45):13386-94
pubmed: 12416983
PLoS One. 2014 Jan 31;9(1):e87134
pubmed: 24498026
FEBS J. 2008 Mar;275(5):903-13
pubmed: 18205830
Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3060-3065
pubmed: 29507227
J Cell Biol. 2011 Nov 28;195(5):815-26
pubmed: 22123865
Science. 2012 Jun 22;336(6088):1590-5
pubmed: 22723425
Protein Sci. 1992 Apr;1(4):517-21
pubmed: 1304353
Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8274-9
pubmed: 18550837
Mol Biol Cell. 2011 Dec;22(23):4588-601
pubmed: 21998205
Nat Methods. 2012 Jul;9(7):671-5
pubmed: 22930834
Biol Chem. 2011 Aug;392(8-9):681-7
pubmed: 21824002
J Cell Biol. 2011 Dec 12;195(6):993-1004
pubmed: 22144691