Structure-affinity insights into the Na
Archaeal Proteins
/ chemistry
Binding Sites
/ genetics
Binding, Competitive
Calcium
/ metabolism
Hydrogen-Ion Concentration
Ion Transport
/ genetics
Kinetics
Methanocaldococcus
/ genetics
Mutation
Protein Binding
Protein Domains
Sodium
/ metabolism
Sodium-Calcium Exchanger
/ chemistry
Spectroscopy, Fourier Transform Infrared
/ methods
ATR-FTIR
CA superfamily
Ca2+
Ca2+ signaling
NCKX
NCX
antiporter
ion binding
membrane protein
mitochondrial NCLX
Journal
The FEBS journal
ISSN: 1742-4658
Titre abrégé: FEBS J
Pays: England
ID NLM: 101229646
Informations de publication
Date de publication:
11 2020
11 2020
Historique:
received:
26
08
2019
revised:
22
12
2019
accepted:
12
02
2020
pubmed:
15
2
2020
medline:
25
5
2021
entrez:
15
2
2020
Statut:
ppublish
Résumé
Selective recognition and transport of Na
Substances chimiques
Archaeal Proteins
0
Sodium-Calcium Exchanger
0
Sodium
9NEZ333N27
Calcium
SY7Q814VUP
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
4678-4695Informations de copyright
© 2020 Federation of European Biochemical Societies.
Références
Blaustein MP & Lederer WJ (1999) Sodium/calcium exchange: its physiological implications. Physiol Rev 79, 763-854.
Philipson KD & Nicoll DA (2000) Sodium-calcium exchange: a molecular perspective. Annu Rev Physiol 62, 111-133.
Khananshvili D (2013) The SLC8 gene family of sodium-calcium exchangers (NCX): structure, function, and regulation in health and disease. Mol Aspects Med 34, 220-235.
Khananshvili D (2014) Sodium-calcium exchangers (NCX): Molecular hallmarks underlying the tissue-specific and systemic functions. Plügers Arch 466, 43-60.
Reeves JP & Hale CC (1984) The stoichiometry of the cardiac sodium-calcium exchange system. J Biol Chem 259, 7733-7739.
Bers DM & Ginsburg KS (2007) Na:Ca stoichiometry and cytosolic Ca-dependent activation of NCX in intact cardiomyocytes. Ann N Y Acad Sci 1099, 326-338.
Shlosman I, Marinelli F, Faraldo-Gómez JD & Mindell JA (2018) The prokaryotic Na+/Ca2+ exchanger NCX_Mj transports Na+ and Ca2+ in a 3:1 stoichiometry. J Gen Physiol 150, 51-65.
Khananshvili D (1990) Distinction between the two basic mechanisms of cation transport in the cardiac Na+-Ca2+ exchange system. Biochemistry 29, 2437-2442.
Niggli E & Lederer WJ (1991) Molecular operations of the sodium-calcium exchanger revealed by conformational currents. Nature 349, 621-624.
Hilgemann DW, Nicoll DA & Philipson KD (1991) Charge movement during Na+-translocation by native and cloned Na+/Ca2+ exchanger. Nature 352, 715-718.
Baazov D, Wang X & Khananshvili D (1999) Time-resolved monitoring of electrogenic Na+-Ca2+ exchange in the isolated cardiac sarcolemma vesicles by using a rapid-response fluorescent probe. Biochemistry 38, 1435-1445.
Bers DM (2008) Calcium cycling and signaling in cardiac myocytes. Annu Rev Physiol 70, 23-49.
Läuger P (1987) Voltage dependence of sodium-calcium exchange: predictions from kinetic models. J Membr Biol 99, 1-11.
Verkhratsky A, Trebak M, Perocchi F, Khananshvili D & Sekler I (2018) Crosslink between calcium and sodium signalling. Exp Physiol 103, 157-169.
Khananshvili D (1991) Voltage-dependent modulation of ion-binding and translocation in the cardiac Na+-Ca2+ exchanger. J Biol Chem 266, 13764-13769.
Khananshvili D & Weil-Maslansky E (1994) The Cardiac Na+-Ca2+ exchanger: relative rates of calcium and sodium movements and their modulation by protonation-deprotonation of the carrier. Biochemistry 33, 312-319.
Khananshvili D, Shaulov G & Weil-Maslansky E (1995) Rate-limiting mechanisms of exchange reactions in the cardiac sarcolemma Na+-Ca2+ exchanger. Biochemistry 33, 10290-10297.
Liao J, Li H, Zeng W, Sauer DB, Belmares R & Jiang Y (2012) Structural insight into the ion-exchange mechanism of the sodium/calcium exchanger. Science 335, 686-690.
Giladi M, Shor R, Lisnyansky M & Khananshvili D (2016) Structure-functional basis of ion transport in sodium-calcium exchanger (NCX) proteins. Int J Mol Sci 17, 1-14. pii: E1949.
Giladi M, Tal I & Khananshvili D (2016) Structural features of ion transport and allosteric regulation in sodium-calcium exchanger (NCX) proteins. Front Physiol 7, 30.
Nishizawa T, Kita S, Maturana AD, Furuya N, Hirata K, Kasuya G, Ogasawara S, Dohmae N, Iwamoto T, Ishitani R et al. (2013) Structural basis for the counter-transport mechanism of a H+/Ca2+ exchanger. Science 341, 168-172.
Waight AB, Pedersen BP, Schlessinger A, Bonomi M, Chau BH, Roe-Zurz Z, Risenmay AJ, Sali A & Stroud RM (2013) Structural basis for alternating access of a eukaryotic calcium/proton exchanger. Nature 499, 107-110.
Wu M, Tonga S, Walterspergerb S, Diederichsc K, Wang M & Zheng L (2013) Crystal structure of Ca2+/H+ antiporter protein YfkE reveals the mechanisms of Ca2+ efflux and its pH regulation. Proc Natl Acad Sci USA 110, 11367-11372.
Zhekova H, Zhao C, Schnetkamp PP & Noskov SY (2016) Characterization of the cation binding sites in the NCKX2 Na+/Ca2+-K+ exchanger. Biochemistry 55, 6445-6455.
Palty R & Sekler I (2012) The mitochondrial Na+/Ca2+ exchanger. Cell Calcium 52, 9-15.
Hilge M, Aelen J & Vuister GW (2006) Ca2+ regulation in the Na+/Ca2+ exchanger involves two markedly different Ca2+ sensors. Mol Cell 22, 15-25.
Ottolia M, Nicoll DA & Philipson KD (2009) Roles of two Ca2+-binding domains in regulation of the cardiac Na+-Ca2+ exchanger. J Biol Chem 284, 32735-32741.
Forrest LR (2013) (Pseudo-) symmetrical transport. Science 339, 399-341.
Keller R, Ziegler C & Schneider D (2014) When two turn into one: evolution of membrane transporters from half modules. Biol Chem 395, 1379-1388.
Marinelli F, Almagor L, Hiller R, Giladi M, Khananshvili D & Faraldo-Gómez JD (2014) Sodium recognition by the Na+/Ca2+ exchanger in the outward-facing conformation. Proc Natl Acad Sci USA 111, E5354-E5362.
Giladi M, Almagor L, van Dijk L, Hiller R, Man P, Forest E & Khananshvili D (2016) Asymmetric preorganization of inverted pair residues in the sodium-calcium exchanger. Sci Rep 16, 1-13.
van Dijk L, Giladi M, Refaeli B, Hiller R, Cheng MH, Bahar I & Khananshvili D (2018) Key residues controlling bidirectional ion movements in Na+/Ca2+ exchanger. Cell Calcium 76, 10-22.
Almagor L, Giladi M, van Dijk L, Buki T, Hiller R & Khananshvili D (2014) Functional asymmetry of bidirectional Ca2+-movements in an archaeal sodium-calcium exchanger (NCX_Mj). Cell Calcium 56, 276-284.
Giladi M, van Dijk L, Refaeli B, Almagor L, Hiller R, Man P, Forest E & Khananshvili D (2017) Dynamic distinctions in the Na+/Ca2+ exchanger adopting the inward- and outward-facing conformational states. J Biol Chem 292, 12311-12323.
Liao J, Marinelli F, Lee C, Huang Y, Faraldo-Gómez JD & Jiang Y (2016) Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger. Nat Struct Mol Biol 23, 590-599.
Khananshvili D (2018) Structure-dynamic coupling through Ca2+-binding regulatory domains of mammalian NCX isoform/splice variants. Adv Exp Med Biol 981, 41-58.
Khananshvili D (2016) Long-range allosteric regulation of pumps and transporters: What can we learn from mammalian NCX antiporters? Adv Biochem Health Dis 14, 93-115.
Giladi M & Khananshvili D (2013) Molecular determinants of allosteric regulation in NCX proteins. Adv Exp Med Biol 961, 35-48.
Goormaghtigh E, Raussens V & Ruysschaert J-M (1999) Attenuated total reflection infrared spectroscopy of proteins and lipids in biological membranes. Biochim Biophys Acta 1422, 105-185.
Inoue K, Ono H, Abe-Yoshizumi R, Yoshizawa S, Ito H, Kogure K & Kandori H (2013) A light-driven sodium ion pump in marine bacteria. Nat Commun 4, 1678.
Furutani Y (2018) Ion-protein interactions of a potassium ion channel studied by attenuated total reflection Fourier transform infrared spectroscopy. Biophys Rev 10, 235-239.
Kimura T, Lorenz-Fonfria VA, Douki S, Motoki H, Ishitani R, Nureki O, Higashi M & Furutani Y (2018) Vibrational and molecular properties of Mg2+ binding and ion selectivity in the magnesium channel MgtEJ. Phys Chem B 122, 9681-9696.
Iwaki M, Takeshita K, Kondo HX, Kinoshita K, Okamura Y, Takano Y, Nakagawa A & Kandori H (2018) Zn2+-Binding to the voltage-gated proton channel Hv1/VSOP. J Phys Chem B 122, 9076-9080.
Onoue Y, Iwaki M, Shinobu A, Nishihara Y, Iwatsuki H, Terashima H, Kitao A, Kandori H & Homma M (2019) Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor. Sci Rep 9, 11216.
Refaeli B, Giladi M, Hiller R & Khananshvili D (2016) Structure-based engineering of lithium-transport capacity in an archaeal sodium-calcium exchanger. Biochemistry 55, 1673-1676.
Kandori H, Furutani Y & Murata T (2015) Infrared spectroscopic studies on the V-ATPase. Biochim Biophys Acta 1847, 134-141.
Barth A (2000) The infrared absorption of amino acid side chains. Prog Biophys Mol Biol 74, 141-173.
Barth A (2007) Infrared spectroscopy of proteins. Biochim Biophys Acta, Bioenerg 1767, 1073-1101.
Kakihana M, Nagumo T, Okamoto M & Kakihana H (1987) Coordination structures for uranyl carboxylate complexes in aqueous solution studied by IR and 13C NMR spectra. J Phys Chem 91, 6128-6136.
Nara M, Torii H & Tasumi M (1996) Correlation between the vibrational frequencies of the carboxylate group and the types of its coordination to a metal ion: an ab initio molecular orbital study. J Phys Chem 100, 19812-19817.
Kang KJ, Shibukawa Y, Szerencsei RT & Schnetkamp PP (2005) Substitution of a single residue, Asp575, renders the NCKX2 K+-dependent Na+/Ca2+ exchanger independent of K+. J Biol Chem 280, 6834-6839.
Jalloul AH, Cai S, Szerencsei RT & Schnetkamp PPM (2018) Residues important for K+ ion transport in the K+-dependent Na+-Ca2+ exchanger (NCKX2). Cell Calcium 74, 61-72.
Jalloul AH, Liu G, Szerencsei RT & Schnetkamp PPM (2018) Residues important for Ca2+ ion transport in the neuronal K+-dependent Na+-Ca2+ exchanger (NCKX2). Cell Calcium 74, 187-197.
Khananshvili D, Weil-Maslansky E & Baazov D (1996) Kinetics and mechanism: modulation of ion transport in the cardiac sarcolemma sodium-calcium exchanger by protons, monovalent ions, and temperature. Ann NY Acad Sci 779, 217-235.
Giladi M, Lee SY, Refaeli B, Hiller R, Chung KY & Khananshvili D (2019) Structure-dynamic and functional relationships in a Li+-transporting sodium-calcium exchanger mutant. BBA Bioenergetics 1860, 189-200.
Glasoe PK & Long FA (1960) Use of glass electrodes to measure acidities in deuterium oxide. J Phys Chem 64, 188-190.