Influenza Classification Suite: An automated Galaxy workflow for rapid influenza sequence analysis.
Galaxy
Influenza
data analysis
genomics
workflow
Journal
Influenza and other respiratory viruses
ISSN: 1750-2659
Titre abrégé: Influenza Other Respir Viruses
Pays: England
ID NLM: 101304007
Informations de publication
Date de publication:
05 2020
05 2020
Historique:
received:
22
05
2019
revised:
05
12
2019
accepted:
13
01
2020
pubmed:
18
2
2020
medline:
20
2
2021
entrez:
18
2
2020
Statut:
ppublish
Résumé
Influenza viruses continually evolve to evade population immunity, and the different lineages are assigned into clades based on shared mutations. We have developed a publicly available computational workflow, the Influenza Classification Suite, for rapid clade mapping of sequenced influenza viruses. This suite provides a user-friendly workflow implemented in Galaxy to automate clade calling and antigenic site extraction. Workflow input includes clade definition and amino acid index array files, which can be customized to identify any clades of interest. The Influenza Classification Suite provides rapid, high-resolution understanding of circulating influenza strain evolution to inform influenza vaccine effectiveness and the need for potential vaccine reformulation.
Identifiants
pubmed: 32064792
doi: 10.1111/irv.12722
pmc: PMC7182599
doi:
Types de publication
Evaluation Study
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
358-362Informations de copyright
© 2020 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd.
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