Machine learning helps identifying volume-confounding effects in radiomics.
Adult
Aged
Aged, 80 and over
Algorithms
Carcinoma, Non-Small-Cell Lung
/ diagnostic imaging
Carcinoma, Squamous Cell
/ diagnostic imaging
Cluster Analysis
Databases, Factual
Decision Support Systems, Clinical
Female
Humans
Laryngeal Neoplasms
/ diagnostic imaging
Lung Neoplasms
/ diagnostic imaging
Machine Learning
Male
Middle Aged
Oropharyngeal Neoplasms
/ diagnostic imaging
Principal Component Analysis
Radiometry
/ methods
Regression Analysis
Retrospective Studies
Software
Squamous Cell Carcinoma of Head and Neck
/ diagnostic imaging
Tomography, X-Ray Computed
Head and neck
Lung
Machine learning
Predictions
Radiomics
Journal
Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB)
ISSN: 1724-191X
Titre abrégé: Phys Med
Pays: Italy
ID NLM: 9302888
Informations de publication
Date de publication:
Mar 2020
Mar 2020
Historique:
received:
30
10
2019
revised:
12
02
2020
accepted:
13
02
2020
pubmed:
24
2
2020
medline:
7
1
2021
entrez:
24
2
2020
Statut:
ppublish
Résumé
Highlighting the risk of biases in radiomics-based models will help improve their quality and increase usage as decision support systems in the clinic. In this study we use machine learning-based methods to identify the presence of volume-confounding effects in radiomics features. Methods 841 radiomics features were extracted from two retrospective publicly available datasets of lung and head neck cancers using open source software. Unsupervised hierarchical clustering and principal component analysis (PCA) identified relations between radiomics and clinical outcomes (overall survival). Bootstrapping techniques with logistic regression verified features' prognostic power and robustness. Results Over 80% of the features had large pairwise correlations. Nearly 30% of the features presented strong correlations with tumor volume. Using volume-independent features for clustering and PCA did not allow risk stratification of patients. Clinical predictors outperformed radiomics features in bootstrapping and logistic regression. Conclusions The adoption of safeguards in radiomics is imperative to improve the quality of radiomics studies. We proposed machine learning (ML) - based methods for robust radiomics signatures development.
Identifiants
pubmed: 32088562
pii: S1120-1797(20)30041-7
doi: 10.1016/j.ejmp.2020.02.010
pii:
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
24-30Informations de copyright
Copyright © 2020 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.
Déclaration de conflit d'intérêts
Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.