Clinical validation of qPCR Target Selector™ assays using highly specific switch-blockers for rare mutation detection.


Journal

Journal of clinical pathology
ISSN: 1472-4146
Titre abrégé: J Clin Pathol
Pays: England
ID NLM: 0376601

Informations de publication

Date de publication:
Oct 2020
Historique:
received: 19 12 2019
revised: 23 01 2020
accepted: 04 02 2020
pubmed: 7 3 2020
medline: 29 9 2020
entrez: 6 3 2020
Statut: ppublish

Résumé

The identification of actionable DNA mutations associated with a patient's tumour is critical for devising a targeted, personalised cancer treatment strategy. However, these molecular analyses are typically performed using tissue obtained via biopsy, which involves substantial risk and is often not feasible. In addition, biopsied tissue does not always reflect tumour heterogeneity, and sequential biopsies to track disease progression (eg, emergence of drug resistance mutations) are not well tolerated. To overcome these and other biopsy-associated limitations, we have developed non-invasive 'liquid biopsy' technologies to enable the molecular characterisation of a patient's cancer using peripheral blood samples. The Target Selector ctDNA platform uses a real-time PCR-based approach, coupled with DNA sequencing, to identify cancer-associated genetic mutations within circulating tumour DNA. This is accomplished via a patented blocking approach suppressing wild-type DNA amplification, while allowing specific amplification of mutant alleles. To promote the clinical uptake of liquid biopsy technologies, it is first critical to demonstrate concordance between results obtained via liquid and traditional biopsy procedures. Here, we focused on three genes frequently mutated in cancer: The switch-blocker technology reported here offers a highly effective method for non-invasively determining the molecular signatures of patients with cancer.

Identifiants

pubmed: 32132121
pii: jclinpath-2019-206381
doi: 10.1136/jclinpath-2019-206381
doi:

Substances chimiques

Biomarkers, Tumor 0
Circulating Tumor DNA 0

Types de publication

Journal Article Validation Study

Langues

eng

Sous-ensembles de citation

IM

Pagination

648-655

Informations de copyright

© Author(s) (or their employer(s)) 2020. No commercial re-use. See rights and permissions. Published by BMJ.

Déclaration de conflit d'intérêts

Competing interests: None declared.

Auteurs

Lyle Arnold (L)

Research and Development, Biocept Inc, San Diego, California, USA.
Aegea Biotechnologies, San Diego, California, USA.

Vassilios Alexiadis (V)

Research and Development, Biocept Inc, San Diego, California, USA.

Tim Watanaskul (T)

Research and Development, Biocept Inc, San Diego, California, USA.

Vahid Zarrabi (V)

Department of Molecular Pathology, UCLA, Los Angeles, California, USA.

Jason Poole (J)

Research and Development, Biocept Inc, San Diego, California, USA.

Veena Singh (V)

Clinical Laboratory, Biocept Inc, San Diego, California, USA vsingh@biocept.com.

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Classifications MeSH