A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
04 03 2020
04 03 2020
Historique:
received:
08
10
2019
accepted:
07
02
2020
entrez:
6
3
2020
pubmed:
7
3
2020
medline:
21
10
2020
Statut:
epublish
Résumé
A challenge for data sharing in systems neuroscience is the multitude of different data formats used. Neurodata Without Borders: Neurophysiology 2.0 (NWB:N) has emerged as a standardized data format for the storage of cellular-level data together with meta-data, stimulus information, and behavior. A key next step to facilitate NWB:N adoption is to provide easy to use processing pipelines to import/export data from/to NWB:N. Here, we present a NWB-formatted dataset of 1863 single neurons recorded from the medial temporal lobes of 59 human subjects undergoing intracranial monitoring while they performed a recognition memory task. We provide code to analyze and export/import stimuli, behavior, and electrophysiological recordings to/from NWB in both MATLAB and Python. The data files are NWB:N compliant, which affords interoperability between programming languages and operating systems. This combined data and code release is a case study for how to utilize NWB:N for human single-neuron recordings and enables easy re-use of this hard-to-obtain data for both teaching and research on the mechanisms of human memory.
Identifiants
pubmed: 32132545
doi: 10.1038/s41597-020-0415-9
pii: 10.1038/s41597-020-0415-9
pmc: PMC7055261
doi:
Types de publication
Dataset
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
78Subventions
Organisme : NIMH NIH HHS
ID : R01 MH110831
Pays : United States
Organisme : NINDS NIH HHS
ID : U01 NS103792
Pays : United States
Organisme : NINDS NIH HHS
ID : U19 NS104590
Pays : United States
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