Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
findability
interoperability
metadata
phenomics
plant phenotyping
reusability
standards
Journal
The New phytologist
ISSN: 1469-8137
Titre abrégé: New Phytol
Pays: England
ID NLM: 9882884
Informations de publication
Date de publication:
07 2020
07 2020
Historique:
received:
22
11
2019
accepted:
24
02
2020
pubmed:
15
3
2020
medline:
15
5
2021
entrez:
15
3
2020
Statut:
ppublish
Résumé
Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.
Identifiants
pubmed: 32171029
doi: 10.1111/nph.16544
pmc: PMC7317793
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
260-273Subventions
Organisme : Wellcome Trust
ID : 212930/Z/18/Z
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L024101/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L005069/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 208381/A/17/Z
Pays : United Kingdom
Informations de copyright
© 2020 The Authors. New Phytologist © 2020 New Phytologist Trust.
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