Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest.

Brown marmorated stink bug genome Pentatomid genomics cathepsins chemoreceptors invasive species odorant binding proteins opsins polyphagy xenobiotic detoxification

Journal

BMC genomics
ISSN: 1471-2164
Titre abrégé: BMC Genomics
Pays: England
ID NLM: 100965258

Informations de publication

Date de publication:
14 Mar 2020
Historique:
received: 29 09 2019
accepted: 20 01 2020
entrez: 16 3 2020
pubmed: 17 3 2020
medline: 18 11 2020
Statut: epublish

Résumé

Halyomorpha halys (Stål), the brown marmorated stink bug, is a highly invasive insect species due in part to its exceptionally high levels of polyphagy. This species is also a nuisance due to overwintering in human-made structures. It has caused significant agricultural losses in recent years along the Atlantic seaboard of North America and in continental Europe. Genomic resources will assist with determining the molecular basis for this species' feeding and habitat traits, defining potential targets for pest management strategies. Analysis of the 1.15-Gb draft genome assembly has identified a wide variety of genetic elements underpinning the biological characteristics of this formidable pest species, encompassing the roles of sensory functions, digestion, immunity, detoxification and development, all of which likely support H. halys' capacity for invasiveness. Many of the genes identified herein have potential for biomolecular pesticide applications. Availability of the H. halys genome sequence will be useful for the development of environmentally friendly biomolecular pesticides to be applied in concert with more traditional, synthetic chemical-based controls.

Sections du résumé

BACKGROUND BACKGROUND
Halyomorpha halys (Stål), the brown marmorated stink bug, is a highly invasive insect species due in part to its exceptionally high levels of polyphagy. This species is also a nuisance due to overwintering in human-made structures. It has caused significant agricultural losses in recent years along the Atlantic seaboard of North America and in continental Europe. Genomic resources will assist with determining the molecular basis for this species' feeding and habitat traits, defining potential targets for pest management strategies.
RESULTS RESULTS
Analysis of the 1.15-Gb draft genome assembly has identified a wide variety of genetic elements underpinning the biological characteristics of this formidable pest species, encompassing the roles of sensory functions, digestion, immunity, detoxification and development, all of which likely support H. halys' capacity for invasiveness. Many of the genes identified herein have potential for biomolecular pesticide applications.
CONCLUSIONS CONCLUSIONS
Availability of the H. halys genome sequence will be useful for the development of environmentally friendly biomolecular pesticides to be applied in concert with more traditional, synthetic chemical-based controls.

Identifiants

pubmed: 32171258
doi: 10.1186/s12864-020-6510-7
pii: 10.1186/s12864-020-6510-7
pmc: PMC7071726
doi:

Substances chimiques

Insect Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

227

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM113230
Pays : United States

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Auteurs

Michael E Sparks (ME)

USDA-ARS Invasive Insect Biocontrol and Behavior Laboratory, Beltsville, MD, 20705, USA. michael.sparks2@usda.gov.

Raman Bansal (R)

USDA-ARS San Joaquin Valley Agricultural Sciences Center, Parlier, CA, 93648, USA.

Joshua B Benoit (JB)

Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.

Michael B Blackburn (MB)

USDA-ARS Invasive Insect Biocontrol and Behavior Laboratory, Beltsville, MD, 20705, USA.

Hsu Chao (H)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Mengyao Chen (M)

Department of Entomology, University of Maryland, College Park, MD, 20742, USA.

Sammy Cheng (S)

Department of Biology, University of Rochester, Rochester, NY, 14627, USA.

Christopher Childers (C)

USDA-ARS National Agricultural Library, Beltsville, MD, 20705, USA.

Huyen Dinh (H)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Harsha Vardhan Doddapaneni (HV)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Shannon Dugan (S)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Elena N Elpidina (EN)

A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119911, Russia.

David W Farrow (DW)

Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.

Markus Friedrich (M)

Department of Biological Sciences, Wayne State University, Detroit, MI, 48201, USA.

Richard A Gibbs (RA)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Brantley Hall (B)

Department of Biochemistry, Virginia Tech, Blacksburg, VA, 24061, USA.

Yi Han (Y)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Richard W Hardy (RW)

Department of Biology, Indiana University, Bloomington, IN, 47405, USA.

Christopher J Holmes (CJ)

Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.

Daniel S T Hughes (DST)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Panagiotis Ioannidis (P)

Department of Genetic Medicine and Development, University of Geneva Medical School and Swiss Institute of Bioinformatics, 1211, Geneva, Switzerland.
Present address: Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, 73100, Heraklion, Crete, Greece.

Alys M Cheatle Jarvela (AM)

Department of Entomology, University of Maryland, College Park, MD, 20742, USA.

J Spencer Johnston (JS)

Department of Entomology, Texas A&M University, College Station, TX, 77843, USA.

Jeffery W Jones (JW)

Department of Biological Sciences, Wayne State University, Detroit, MI, 48201, USA.

Brent A Kronmiller (BA)

Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, 97331, USA.

Faith Kung (F)

Department of Entomology, University of Maryland, College Park, MD, 20742, USA.

Sandra L Lee (SL)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Alexander G Martynov (AG)

Center for Data-Intensive Biomedicine and Biotechnology, Skolkovo Institute of Science and Technology, Skolkovo, 143025, Russia.

Patrick Masterson (P)

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.

Florian Maumus (F)

URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.

Monica Munoz-Torres (M)

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

Shwetha C Murali (SC)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Terence D Murphy (TD)

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.

Donna M Muzny (DM)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

David R Nelson (DR)

Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN, 38163, USA.

Brenda Oppert (B)

USDA-ARS Center for Grain and Animal Health Research, Manhattan, KS, 66502, USA.

Kristen A Panfilio (KA)

Developmental Biology, Institute for Zoology: University of Cologne, 50674, Cologne, Germany.
School of Life Sciences, University of Warwick, Gibbet Hill Campus, Coventry, CV4 7AL, United Kingdom.

Débora Pires Paula (DP)

EMBRAPA Genetic Resources and Biotechnology, Brasília, DF, 70770-901, Brazil.

Leslie Pick (L)

Department of Entomology, University of Maryland, College Park, MD, 20742, USA.

Monica F Poelchau (MF)

USDA-ARS National Agricultural Library, Beltsville, MD, 20705, USA.

Jiaxin Qu (J)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Katie Reding (K)

Department of Entomology, University of Maryland, College Park, MD, 20742, USA.

Joshua H Rhoades (JH)

USDA-ARS Invasive Insect Biocontrol and Behavior Laboratory, Beltsville, MD, 20705, USA.

Adelaide Rhodes (A)

Larner College of Medicine, The University of Vermont, Burlington, VT, 05452, USA.

Stephen Richards (S)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.
Present address: Earth BioGenome Project, University of California, Davis, Davis, CA, 95616, USA.

Rose Richter (R)

Department of Biology, University of Rochester, Rochester, NY, 14627, USA.

Hugh M Robertson (HM)

Department of Entomology, University of Illinois, Urbana-Champaign, IL, 61801, USA.

Andrew J Rosendale (AJ)

Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.

Zhijian Jake Tu (ZJ)

Department of Biochemistry, Virginia Tech, Blacksburg, VA, 24061, USA.

Arun S Velamuri (AS)

USDA-ARS Invasive Insect Biocontrol and Behavior Laboratory, Beltsville, MD, 20705, USA.

Robert M Waterhouse (RM)

Department of Ecology and Evolution, University of Lausanne and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.

Matthew T Weirauch (MT)

Division of Biomedical Informatics, and Division of Developmental Biology, Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Department of Pediatrics, College of Medicine, University of Cincinnati, Cincinnati, OH, 45267, USA.

Jackson T Wells (JT)

Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, 97331, USA.

John H Werren (JH)

Department of Biology, University of Rochester, Rochester, NY, 14627, USA.

Kim C Worley (KC)

Department of Human and Molecular Genetics, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA.

Evgeny M Zdobnov (EM)

Department of Genetic Medicine and Development, University of Geneva Medical School and Swiss Institute of Bioinformatics, 1211, Geneva, Switzerland.

Dawn E Gundersen-Rindal (DE)

USDA-ARS Invasive Insect Biocontrol and Behavior Laboratory, Beltsville, MD, 20705, USA. dawn.gundersen-rindal@usda.gov.

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