Machine Learning Uncovers Food- and Excipient-Drug Interactions.


Journal

Cell reports
ISSN: 2211-1247
Titre abrégé: Cell Rep
Pays: United States
ID NLM: 101573691

Informations de publication

Date de publication:
17 03 2020
Historique:
received: 08 07 2019
revised: 06 01 2020
accepted: 26 02 2020
entrez: 19 3 2020
pubmed: 19 3 2020
medline: 24 3 2021
Statut: ppublish

Résumé

Inactive ingredients and generally recognized as safe compounds are regarded by the US Food and Drug Administration (FDA) as benign for human consumption within specified dose ranges, but a growing body of research has revealed that many inactive ingredients might have unknown biological effects at these concentrations and might alter treatment outcomes. To speed up such discoveries, we apply state-of-the-art machine learning to delineate currently unknown biological effects of inactive ingredients-focusing on P-glycoprotein (P-gp) and uridine diphosphate-glucuronosyltransferase-2B7 (UGT2B7), two proteins that impact the pharmacokinetics of approximately 20% of FDA-approved drugs. Our platform identifies vitamin A palmitate and abietic acid as inhibitors of P-gp and UGT2B7, respectively; in silico, in vitro, ex vivo, and in vivo validations support these interactions. Our predictive framework can elucidate biological effects of commonly consumed chemical matter with implications on food- and excipient-drug interactions and functional drug formulation development.

Identifiants

pubmed: 32187543
pii: S2211-1247(20)30268-0
doi: 10.1016/j.celrep.2020.02.094
pmc: PMC7179333
mid: NIHMS1578467
pii:
doi:

Substances chimiques

ATP Binding Cassette Transporter, Subfamily B, Member 1 0
Abietanes 0
Diterpenes 0
Excipients 0
Pharmaceutical Preparations 0
Retinyl Esters 0
retinol palmitate 1D1K0N0VVC
UGT2B7 protein, human EC 2.4.1.-
Glucuronosyltransferase EC 2.4.1.17
abietic acid V3DHX33184

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

3710-3716.e4

Subventions

Organisme : NIBIB NIH HHS
ID : R01 EB000244
Pays : United States
Organisme : NIBIB NIH HHS
ID : R37 EB000244
Pays : United States

Informations de copyright

Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Interests Complete details of all relationships for profit and not for profit for G.T. can be found at the following link: https://www.dropbox.com/sh/szi7vnr4a2ajb56/AABs5N5i0q9AfT1IqIJAE-T5a?dl=0. Complete details for R.L. can be found at the following link: https://www.dropbox.com/s/yc3xqb5s8s94v7x/Rev%20Langer%20COI.pdf?dl=0. D.R., R.L., and G.T. are co-inventors on a provisional patent application encompassing systems and algorithms capable of quantifying and providing IIG burden in medications and their potential biological implications.

Références

Sci Transl Med. 2019 Mar 13;11(483):
pubmed: 30867323
Proc Natl Acad Sci U S A. 1997 Mar 4;94(5):2031-5
pubmed: 9050899
FASEB J. 1999 May;13(8):805-12
pubmed: 10224224
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W270-7
pubmed: 21624888
Cancer Lett. 2013 Aug 9;336(1):149-57
pubmed: 23624302
Fed Regist. 2018 May 21;83(98):23358-9
pubmed: 30019869
J Pharm Pharmacol. 2007 Jul;59(7):965-9
pubmed: 17637191
Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):751-6
pubmed: 21177428
Br J Pharmacol. 2004 Oct;143(3):379-87
pubmed: 15351776
Biochem Biophys Res Commun. 2000 Oct 5;276(3):909-16
pubmed: 11027568
Food Chem Toxicol. 2009 Feb;47(2):267-78
pubmed: 19041920
Toxicol Lett. 2004 Apr 15;150(1):3-18
pubmed: 15068820
Drug Metab Dispos. 2009 Sep;37(9):1793-6
pubmed: 19487252
Curr Opin Struct Biol. 2006 Feb;16(1):127-36
pubmed: 16442279
Chem Sci. 2016 Jun 1;7(6):3919-3927
pubmed: 30155037
Nat Chem. 2016 Jun;8(6):531-41
pubmed: 27219696
Nucleic Acids Res. 2014 Jan;42(Database issue):D1083-90
pubmed: 24214965
Nat Chem. 2019 May;11(5):402-418
pubmed: 30988417
Angew Chem Int Ed Engl. 2014 Jan 7;53(2):582-5
pubmed: 24282133
J Agric Food Chem. 2013 Aug 7;61(31):7507-14
pubmed: 23848473
Drug Metab Dispos. 2004 Nov;32(11):1201-8
pubmed: 15304429
Bioinformatics. 2006 Jan 15;22(2):195-201
pubmed: 16301204
Phytomedicine. 2016 Mar 15;23(3):316-23
pubmed: 26969385
PLoS One. 2013 Apr 16;8(4):e61007
pubmed: 23613770
Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082
pubmed: 29126136
Biochim Biophys Acta. 1993 Feb 17;1175(3):277-82
pubmed: 8435444
Hum Mol Genet. 2010 Mar 15;19(6):1058-65
pubmed: 20035013

Auteurs

Daniel Reker (D)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Division of Gastroenterology, Hepatology and Endoscopy, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA; MIT-IBM Watson AI Lab, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Yunhua Shi (Y)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Ameya R Kirtane (AR)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Kaitlyn Hess (K)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Grace J Zhong (GJ)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Evan Crane (E)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Chih-Hsin Lin (CH)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Robert Langer (R)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; MIT-IBM Watson AI Lab, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

Giovanni Traverso (G)

David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Division of Gastroenterology, Hepatology and Endoscopy, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA; MIT-IBM Watson AI Lab, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address: cgt20@mit.edu.

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Classifications MeSH