Sex chromosome evolution in parasitic nematodes of humans.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
23 04 2020
Historique:
received: 31 07 2019
accepted: 20 03 2020
entrez: 25 4 2020
pubmed: 25 4 2020
medline: 1 8 2020
Statut: epublish

Résumé

Sex determination mechanisms often differ even between related species yet the evolution of sex chromosomes remains poorly understood in all but a few model organisms. Some nematodes such as Caenorhabditis elegans have an XO sex determination system while others, such as the filarial parasite Brugia malayi, have an XY mechanism. We present a complete B. malayi genome assembly and define Nigon elements shared with C. elegans, which we then map to the genomes of other filarial species and more distantly related nematodes. We find a remarkable plasticity in sex chromosome evolution with several distinct cases of neo-X and neo-Y formation, X-added regions, and conversion of autosomes to sex chromosomes from which we propose a model of chromosome evolution across different nematode clades. The phylum Nematoda offers a new and innovative system for gaining a deeper understanding of sex chromosome evolution.

Identifiants

pubmed: 32327641
doi: 10.1038/s41467-020-15654-6
pii: 10.1038/s41467-020-15654-6
pmc: PMC7181701
doi:

Types de publication

Comparative Study Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1964

Subventions

Organisme : Wellcome Trust
ID : 098051
Pays : United Kingdom
Organisme : NIAID NIH HHS
ID : U19 AI110820
Pays : United States
Organisme : Medical Research Council
ID : MR/L001020/1
Pays : United Kingdom

Références

Bioinformatics. 2011 Jan 15;27(2):270-1
pubmed: 21081511
Bioinformatics. 2007 Nov 1;23(21):2947-8
pubmed: 17846036
Mol Biochem Parasitol. 2004 Oct;137(2):215-27
pubmed: 15383292
Science. 2004 Sep 17;305(5691):1743-6
pubmed: 15375261
G3 (Bethesda). 2019 Apr 9;9(4):1211-1230
pubmed: 30770412
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Mol Cell. 2010 May 28;38(4):576-89
pubmed: 20513432
Mol Biochem Parasitol. 1990 Nov;43(1):39-49
pubmed: 2290445
Bioinformatics. 2011 Sep 1;27(17):2361-7
pubmed: 21752801
Nat Genet. 2011 Mar;43(3):228-35
pubmed: 21336279
Pac Symp Biocomput. 2001;:127-38
pubmed: 11262934
Cell Rep. 2017 Oct 17;21(3):834-844
pubmed: 29045848
Genome Res. 2006 Jul;16(7):815-26
pubmed: 16751340
Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1560-5
pubmed: 15668401
Parasitology. 1986 Feb;92 ( Pt 1):181-97
pubmed: 3960591
Filaria J. 2005 Nov 02;4:10
pubmed: 16266430
WormBook. 2005 Sep 07;:1-15
pubmed: 18050393
Genome Biol. 2004;5(2):R12
pubmed: 14759262
Front Neuroinform. 2014 Feb 21;8:14
pubmed: 24600388
BMC Genomics. 2013 Sep 22;14:639
pubmed: 24053607
Mol Biochem Parasitol. 2013 May;189(1-2):33-7
pubmed: 23669148
PLoS One. 2011;6(9):e24576
pubmed: 21931761
Science. 2007 Sep 21;317(5845):1756-60
pubmed: 17885136
Dev Biol. 1995 Aug;170(2):679-89
pubmed: 7649393
Trop Med Parasitol. 1989 Sep;40(3):292-4
pubmed: 2617035
Parasitol Res. 2014 May;113(5):1827-35
pubmed: 24664084
Trends Parasitol. 2004 Apr;20(4):151-3
pubmed: 15099548
PLoS Negl Trop Dis. 2017 Mar 30;11(3):e0005357
pubmed: 28358880
Chromosome Res. 2012 Jul;20(5):579-93
pubmed: 22766638
Parasite Immunol. 2012 Feb-Mar;34(2-3):108-20
pubmed: 22044053
Cell. 2014 Sep 11;158(6):1431-1443
pubmed: 25215497
PLoS Negl Trop Dis. 2011 Nov;5(11):e1261
pubmed: 22140585
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W369-73
pubmed: 16845028
Curr Biol. 2010 Oct 12;20(19):1687-96
pubmed: 20832309
Genetics. 2011 Mar;187(3):685-99
pubmed: 21212235
N Engl J Med. 2007 Sep 6;357(10):1018-27
pubmed: 17804846
Genome Res. 2009 Sep;19(9):1639-45
pubmed: 19541911
Nucleic Acids Res. 2016 Jan 4;44(D1):D110-5
pubmed: 26531826
J Helminthol. 1991 Sep;65(3):208-10
pubmed: 1940251
Bioinformatics. 2007 May 1;23(9):1061-7
pubmed: 17332020
Genome Biol. 2010;11(4):R41
pubmed: 20388197
Nat Rev Genet. 2011 Mar;12(3):157-66
pubmed: 21301475
Methods Mol Biol. 2004;270:379-94
pubmed: 15153640
Mol Gen Genet. 1986 Feb;202(2):212-8
pubmed: 3458021
Cell. 2009 Jul 23;138(2):314-27
pubmed: 19632181
Nucleic Acids Res. 2002 Jun 1;30(11):2478-83
pubmed: 12034836
Parasitology. 2015 Feb;142 Suppl 1:S26-39
pubmed: 24963797
PLoS Pathog. 2013 Mar;9(3):e1003182
pubmed: 23516354
Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3339-44
pubmed: 12626739
Genetics. 2014 Jul;197(3):865-83
pubmed: 24793291
Trends Genet. 2011 Sep;27(9):350-7
pubmed: 21962970
J Helminthol. 1987 Mar;61(1):43-6
pubmed: 3571919
J Comput Biol. 2009 Feb;16(2):317-29
pubmed: 19193149
Evolution. 2016 Jan;70(1):229-34
pubmed: 26639450
Nat Methods. 2009 Apr;6(4):291-5
pubmed: 19287394
PLoS One. 2012;7(11):e47768
pubmed: 23185243
Chromosoma. 2000 Jun;109(3):173-80
pubmed: 10929195
Proc Natl Acad Sci U S A. 1986 Feb;83(3):797-801
pubmed: 3003750
Bioinformatics. 2009 May 15;25(10):1335-7
pubmed: 19307242
Parasit Vectors. 2014 Mar 31;7:146
pubmed: 24685183
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Nat Methods. 2013 Jun;10(6):563-9
pubmed: 23644548
Nature. 1998 Mar 5;392(6671):71-5
pubmed: 9510248
PLoS Biol. 2003 Nov;1(2):E45
pubmed: 14624247
J Parasitol. 1983 Dec;69(6):1090-3
pubmed: 6674460
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W199-203
pubmed: 15215380
Genome Biol. 2007;8(2):R24
pubmed: 17324271
Bioinformatics. 2010 Jul 15;26(14):1699-703
pubmed: 20513662
Mol Biochem Parasitol. 2017 Jul;215:2-10
pubmed: 27899279
WormBook. 2015 Jun 09;:1-49
pubmed: 26069085
Proc Biol Sci. 2017 May 17;284(1854):
pubmed: 28469017
Bioinformatics. 2010 Jul 15;26(14):1704-7
pubmed: 20562415
Mol Biochem Parasitol. 1999 Mar 15;99(1):1-10
pubmed: 10215019
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Syst Biol. 2010 May;59(3):307-21
pubmed: 20525638
Nat Commun. 2016 Jul 04;7:12087
pubmed: 27373494
Science. 1991 Mar 1;251(4997):1030-3
pubmed: 1998119
PLoS Biol. 2014 Jul 01;12(7):e1001899
pubmed: 24983465
Nat Microbiol. 2016 Nov 21;2:16216
pubmed: 27869790
Nucleic Acids Res. 2003 May 15;31(10):2553-60
pubmed: 12736304
Can J Zool. 1966 Nov;44(6):1003-6
pubmed: 6009831

Auteurs

Jeremy M Foster (JM)

Division of Protein Expression & Modification, New England Biolabs, Ipswich, MA, 01938, USA.

Alexandra Grote (A)

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.

John Mattick (J)

Institute for Genome Science, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

Alan Tracey (A)

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.

Yu-Chih Tsai (YC)

Pacific Biosciences, Menlo Park, CA, 94025, USA.

Matthew Chung (M)

Institute for Genome Science, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

James A Cotton (JA)

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.

Tyson A Clark (TA)

Pacific Biosciences, Menlo Park, CA, 94025, USA.

Adam Geber (A)

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.

Nancy Holroyd (N)

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.

Jonas Korlach (J)

Pacific Biosciences, Menlo Park, CA, 94025, USA.

Yichao Li (Y)

School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, 45701, USA.

Silvia Libro (S)

Division of Protein Expression & Modification, New England Biolabs, Ipswich, MA, 01938, USA.

Sara Lustigman (S)

Laboratory of Molecular Parasitology, Lindsley F. Kimball Research Institute, New York Blood Center, New York, NY, 10065, USA.

Michelle L Michalski (ML)

Department of Biology and Microbiology, University of Wisconsin Oshkosh, Oshkosh, WI, 54901, USA.

Michael Paulini (M)

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

Matthew B Rogers (MB)

Department of Surgery, UPMC Children's Hospital of Pittsburgh, Pittsburgh, PA, 15224, USA.

Laura Teigen (L)

Department of Biology and Microbiology, University of Wisconsin Oshkosh, Oshkosh, WI, 54901, USA.

Alan Twaddle (A)

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.

Lonnie Welch (L)

School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, 45701, USA.

Matthew Berriman (M)

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.

Julie C Dunning Hotopp (JC)

Institute for Genome Science, University of Maryland School of Medicine, Baltimore, MD, 21201, USA. jdhotopp@som.umaryland.edu.
Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA. jdhotopp@som.umaryland.edu.
Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, MD, 21201, USA. jdhotopp@som.umaryland.edu.

Elodie Ghedin (E)

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA. elodie.ghedin@nyu.edu.
Department of Epidemiology, School of Global Public Health, New York University, New York, NY, 10003, USA. elodie.ghedin@nyu.edu.

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