A Cross-linking Mass Spectrometry Approach Defines Protein Interactions in Yeast Mitochondria.

Chromatography, Liquid Cross-Linking Reagents / chemistry Electron Transport Complex I / chemistry Electron Transport Complex III / chemistry Electron Transport Complex IV / metabolism Glucose / metabolism Glycerol / metabolism Isotope Labeling / methods Membrane Proteins / metabolism Mitochondria / metabolism Oxidative Phosphorylation Protein Binding Protein Interaction Maps Proteomics Pyruvate Dehydrogenase Complex / metabolism Saccharomyces cerevisiae / metabolism Saccharomyces cerevisiae Proteins / chemistry Tandem Mass Spectrometry
Protein cross-linking mitochondria function or biology modeling quantification yeast

Journal

Molecular & cellular proteomics : MCP
ISSN: 1535-9484
Titre abrégé: Mol Cell Proteomics
Pays: United States
ID NLM: 101125647

Informations de publication

Date de publication:
07 2020
Historique:
received: 09 03 2020
revised: 24 04 2020
pubmed: 26 4 2020
medline: 11 5 2021
entrez: 26 4 2020
Statut: ppublish

Résumé

Protein cross-linking and the analysis of cross-linked peptides by mass spectrometry is currently receiving much attention. Not only is this approach applied to isolated complexes to provide information about spatial arrangements of proteins, but it is also increasingly applied to entire cells and their organelles. As in quantitative proteomics, the application of isotopic labeling further makes it possible to monitor quantitative changes in the protein-protein interactions between different states of a system. Here, we cross-linked mitochondria from

Identifiants

DOI: 10.1074/mcp.RA120.002028 PMID: 32332106 PMC: PMC7338081
pubmed: 32332106
pii: S1535-9476(20)34979-3
doi: 10.1074/mcp.RA120.002028
pmc: PMC7338081
pii:
doi:

Substances chimiques

Cross-Linking Reagents 0
Membrane Proteins 0
Ndi1 protein, S cerevisiae 0
Pyruvate Dehydrogenase Complex 0
Saccharomyces cerevisiae Proteins 0
Electron Transport Complex IV EC 1.9.3.1
Electron Transport Complex I EC 7.1.1.2
Electron Transport Complex III EC 7.1.1.8
Glucose IY9XDZ35W2
Glycerol PDC6A3C0OX

Banques de données

PDB
['6HU9', '4G73', '4C9G']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1161-1178

Informations de copyright

© 2020 Linden et al.

Déclaration de conflit d'intérêts

Conflict of interest—Authors declare no competing interests.

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Auteurs

Andreas Linden (A)

Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany; Institute of Clinical Chemistry, University Medical Center Göttingen, Göttingen, Germany.

Markus Deckers (M)

Department of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.

Iwan Parfentev (I)

Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.

Ralf Pflanz (R)

Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.

Bettina Homberg (B)

Department of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.

Piotr Neumann (P)

Department of Molecular Structural Biology, Institute for Microbiology and Genetics, Göttingen Center for Molecular Biosciences, Georg-August-University Göttingen, Göttingen, Germany.

Ralf Ficner (R)

Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Göttingen, Göttingen, Germany; Department of Molecular Structural Biology, Institute for Microbiology and Genetics, Göttingen Center for Molecular Biosciences, Georg-August-University Göttingen, Göttingen, Germany.

Peter Rehling (P)

Department of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany; Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Göttingen, Göttingen, Germany; Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Electronic address: Peter.Rehling@medizin.uni-goettingen.de.

Henning Urlaub (H)

Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany; Institute of Clinical Chemistry, University Medical Center Göttingen, Göttingen, Germany. Electronic address: Henning.Urlaub@mpibpc.mpg.de.

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Classifications MeSH

questionsmedicales.fr › Techniques d'investigation › Techniques de chimie analytique › Chromatographie › Chromatographie en phase liquide › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Actions chimiques et utilisations › Utilisations spécialisées de produits chimiques › Produits chimiques de laboratoire › Indicateurs et réactifs › Réactifs réticulants › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Métalloprotéines › Protéines de liaison au fer › Protéines à fer non hème › Ferrosulfoprotéines › Complexe I de la chaîne respiratoire › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Métalloprotéines › Protéines de liaison au fer › Protéines à fer non hème › Ferrosulfoprotéines › Complexe III de la chaîne respiratoire › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Protéines membranaires › Protéines de transport membranaire › Pompes ioniques › Transporteurs de cations › Pompes à protons › Complexe IV de la chaîne respiratoire › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Glucides › Sucres › Oses › Hexose › Glucose › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Glucides › Polyols › Dérivés du glycérol › Glycérol › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Techniques d'investigation › Marquage isotopique › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Protéines membranaires › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Cellules › Structures cellulaires › Fractions subcellulaires › Mitochondries › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Métabolisme › Phosphorylation › Phosphorylation oxydative › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Métabolisme › Liaison aux protéines › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Métabolisme › Voies et réseaux métaboliques › Cartes d'interactions protéiques › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Disciplines des sciences naturelles › Chimie › Biochimie › Protéomique › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Enzymes et coenzymes › Enzymes › Complexes multienzymatiques › Complexe du pyruvate déshydrogénase › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Eucaryotes › Champignons › Levures › Saccharomyces › Saccharomyces cerevisiae › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Protéines fongiques › Protéines de Saccharomyces cerevisiae › A Cross-linking Mass Spectrometry Approach...
questionsmedicales.fr › Techniques d'investigation › Techniques de chimie analytique › Spectrométrie de masse › Spectrométrie de masse en tandem › A Cross-linking Mass Spectrometry Approach...