Role of the trigger loop in translesion RNA synthesis by bacterial RNA polymerase.
DNA damage
DNA repair
DksA
GreA
RNA
RNA polymerase
RNA polymerase (RNAP)
nucleotide excision repair (NER)
secondary channel factor
transcription
transcription-coupled repair
translesion transcription
trigger loop
Journal
The Journal of biological chemistry
ISSN: 1083-351X
Titre abrégé: J Biol Chem
Pays: United States
ID NLM: 2985121R
Informations de publication
Date de publication:
10 07 2020
10 07 2020
Historique:
received:
09
11
2019
revised:
20
05
2020
pubmed:
23
5
2020
medline:
14
1
2021
entrez:
23
5
2020
Statut:
ppublish
Résumé
DNA lesions can severely compromise transcription and block RNA synthesis by RNA polymerase (RNAP), leading to subsequent recruitment of DNA repair factors to the stalled transcription complex. Recent structural studies have uncovered molecular interactions of several DNA lesions within the transcription elongation complex. However, little is known about the role of key elements of the RNAP active site in translesion transcription. Here, using recombinantly expressed proteins,
Identifiants
pubmed: 32439804
pii: S0021-9258(17)48975-7
doi: 10.1074/jbc.RA119.011844
pmc: PMC7363142
doi:
Substances chimiques
Escherichia coli Proteins
0
RNA, Bacterial
0
DNA-Directed RNA Polymerases
EC 2.7.7.6
Banques de données
PDB
['2PPB', '2O5J']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
9583-9595Informations de copyright
© 2020 Agapov et al.
Déclaration de conflit d'intérêts
Conflict of interest—The authors declare that they have no conflicts of interest with the contents of this article.
Références
J Mol Biol. 2013 Jan 9;425(1):82-93
pubmed: 23147217
Nucleic Acids Res. 2015 Feb 18;43(3):1529-36
pubmed: 25605801
Nature. 2011 Mar 10;471(7337):249-53
pubmed: 21346759
Nature. 2007 Jul 12;448(7150):163-8
pubmed: 17581591
Mol Cell. 2012 Apr 13;46(1):18-29
pubmed: 22405652
Mol Cell. 2018 Mar 1;69(5):828-839.e5
pubmed: 29478808
J Biol Chem. 2009 Nov 13;284(46):31658-63
pubmed: 19758983
Cell. 2018 Jan 11;172(1-2):344-357.e15
pubmed: 29224782
Mol Cell. 2018 Mar 1;69(5):802-815.e5
pubmed: 29499135
Science. 2016 May 20;352(6288):993-6
pubmed: 27199428
Nucleic Acids Res. 2019 Nov 4;47(19):10296-10312
pubmed: 31495891
Cell. 2012 Jun 22;149(7):1438-45
pubmed: 22726433
DNA Repair (Amst). 2008 Oct 1;7(10):1670-9
pubmed: 18707026
Ann N Y Acad Sci. 1994 Jul 29;726:351-4
pubmed: 7522425
Nature. 2014 Jan 16;505(7483):372-7
pubmed: 24402227
Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):E410-9
pubmed: 25605892
Cell. 2006 Feb 10;124(3):507-20
pubmed: 16469698
Nucleic Acids Res. 2007;35(17):5694-705
pubmed: 17711918
Nucleic Acids Res. 2012 Apr;40(8):3392-402
pubmed: 22210857
Nucleic Acids Res. 2020 Feb 20;48(3):1341-1352
pubmed: 31840183
J Mol Biol. 2019 Sep 20;431(20):4007-4029
pubmed: 31310765
Annu Rev Microbiol. 2018 Sep 08;72:163-184
pubmed: 30200857
Nat Struct Mol Biol. 2007 Dec;14(12):1127-33
pubmed: 17994106
Mol Cell. 2019 Jul 25;75(2):298-309.e4
pubmed: 31103420
Science. 2007 Feb 9;315(5813):859-62
pubmed: 17290000
Cell. 2005 Jan 28;120(2):183-93
pubmed: 15680325
J Mol Biol. 2008 Jan 11;375(2):353-66
pubmed: 18022639
DNA Repair (Amst). 2017 Aug;56:42-50
pubmed: 28629777
Cell Res. 2008 Jan;18(1):73-84
pubmed: 18166977
Biochem Biophys Res Commun. 2019 Feb 26;510(1):122-127
pubmed: 30665719
Nucleic Acids Res. 1997 Feb 15;25(4):787-93
pubmed: 9016630
PLoS Genet. 2009 Jul;5(7):e1000577
pubmed: 19629170
Mol Cell. 2015 Feb 5;57(3):408-21
pubmed: 25601758
J Biol Chem. 2003 Apr 4;278(14):12344-55
pubmed: 12511572
Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8699-704
pubmed: 27432968
Nucleic Acids Res. 2008 Nov;36(20):6459-71
pubmed: 18854351
DNA Repair (Amst). 2005 Sep 28;4(10):1075-87
pubmed: 16046193
J Mol Biol. 2019 Sep 20;431(20):4093-4102
pubmed: 31175845
Proc Natl Acad Sci U S A. 1994 Aug 30;91(18):8502-6
pubmed: 8078911
Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):E7082-E7091
pubmed: 28784758
Arch Toxicol. 2016 Nov;90(11):2583-2594
pubmed: 27549370
Methods Mol Biol. 2015;1276:31-51
pubmed: 25665557
Mol Cell. 2008 Jun 6;30(5):557-66
pubmed: 18538654
Nature. 2015 Jul 30;523(7562):621-5
pubmed: 26123024
Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2538-E2545
pubmed: 29487211
Nucleic Acids Res. 2016 Feb 18;44(3):1298-308
pubmed: 26733581
EMBO J. 2006 Nov 29;25(23):5481-91
pubmed: 17110932
Nucleic Acids Res. 2018 Nov 30;46(21):11477-11487
pubmed: 30321408
Nat Commun. 2014 Mar 06;5:3408
pubmed: 24598909
Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6555-60
pubmed: 22493230
Mol Cell. 2003 Oct;12(4):959-70
pubmed: 14580346
EMBO J. 2003 Dec 1;22(23):6322-34
pubmed: 14633991
Nucleic Acids Res. 2012 Aug;40(15):7442-51
pubmed: 22570421
J Biol Chem. 2008 Oct 10;283(41):27820-8
pubmed: 18669632
J Biol Chem. 2014 Jan 10;289(2):1151-63
pubmed: 24275665
RNA Biol. 2019 Dec;16(12):1711-1720
pubmed: 31416390
Nucleic Acids Res. 2014 Nov 10;42(20):12707-21
pubmed: 25336618
DNA Repair (Amst). 2007 Jun 1;6(6):841-51
pubmed: 17374514
Proc Natl Acad Sci U S A. 1993 Jul 15;90(14):6601-5
pubmed: 8341674
Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15517-22
pubmed: 20696893
Nature. 2017 Nov 30;551(7682):653-657
pubmed: 29168508
Methods Mol Biol. 2015;1276:13-29
pubmed: 25665556
Cell. 2010 May 14;141(4):595-605
pubmed: 20478253
Nat Struct Mol Biol. 2010 Jan;17(1):99-104
pubmed: 19966797
Elife. 2013 Sep 24;2:e00971
pubmed: 24066225
Nucleic Acids Res. 2014 Dec 1;42(21):13242-53
pubmed: 25389266
Cell. 2002 Jun 14;109(6):757-67
pubmed: 12086674
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3657-62
pubmed: 20142484
Mol Microbiol. 2012 Jul;85(1):12-20
pubmed: 22607628
BMC Biol. 2010 May 07;8:54
pubmed: 20459653
Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12426-12431
pubmed: 27791148
J Biol Chem. 2003 Feb 28;278(9):7294-9
pubmed: 12466278
Chem Res Toxicol. 2006 Sep;19(9):1215-20
pubmed: 16978026
J Biol Chem. 1998 Aug 14;273(33):21276-81
pubmed: 9694887
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20500-5
pubmed: 21057108