SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy, February-March 2020.
Adult
Aged
Betacoronavirus
/ classification
Bronchoalveolar Lavage Fluid
/ virology
COVID-19
COVID-19 Testing
Clinical Laboratory Techniques
/ methods
Coronavirus Infections
/ diagnosis
Female
High-Throughput Nucleotide Sequencing
Hospitalization
Humans
Italy
/ epidemiology
Male
Middle Aged
Mutation
Nasopharynx
/ virology
Pandemics
Phylogeny
Pneumonia, Viral
/ diagnosis
Prospective Studies
RNA, Viral
/ genetics
Real-Time Polymerase Chain Reaction
SARS-CoV-2
Severity of Illness Index
Time Factors
COVID-19
Italy
SARS-CoV-2
coronavirus disease
full genome sequence
phylogenetic tree
respiratory infections
severe acute respiratory syndrome coronavirus 2
viruses
Journal
Emerging infectious diseases
ISSN: 1080-6059
Titre abrégé: Emerg Infect Dis
Pays: United States
ID NLM: 9508155
Informations de publication
Date de publication:
08 2020
08 2020
Historique:
pubmed:
28
5
2020
medline:
30
7
2020
entrez:
28
5
2020
Statut:
ppublish
Résumé
We report phylogenetic and mutational analysis of severe acute respiratory syndrome coronavirus 2 virus strains from the Lazio region of Italy and provide information about the dynamics of virus spread. Data suggest effective containment of clade V strains, but subsequently, multiple waves of clade G strains were circulating widely in Europe.
Identifiants
pubmed: 32459984
doi: 10.3201/eid2608.201525
pmc: PMC7392408
doi:
Substances chimiques
RNA, Viral
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1842-1845Références
J Med Virol. 2020 Mar 19;:
pubmed: 32190908
Euro Surveill. 2020 Apr;25(13):
pubmed: 32265007
Clin Microbiol Infect. 2020 Jul;26(7):954-956
pubmed: 32229288
Nat Commun. 2020 Mar 27;11(1):1620
pubmed: 32221306
J Med Virol. 2020 Mar 29;:
pubmed: 32222993