Binding affinities of 438 HLA proteins to complete proteomes of seven pandemic viruses and distributions of strongest and weakest HLA peptide binders in populations worldwide.
Africa
/ epidemiology
Americas
/ epidemiology
Amino Acid Sequence
Asia
/ epidemiology
Australia
/ epidemiology
Betacoronavirus
/ genetics
COVID-19
Computational Biology
Coronavirus Infections
/ epidemiology
Europe
/ epidemiology
HIV Infections
/ epidemiology
HIV-1
/ genetics
HLA Antigens
/ chemistry
Humans
Influenza A Virus, H1N1 Subtype
/ genetics
Influenza A Virus, H3N2 Subtype
/ genetics
Influenza A Virus, H7N9 Subtype
/ genetics
Influenza, Human
/ epidemiology
Kinetics
Middle East Respiratory Syndrome Coronavirus
/ genetics
Pandemics
Peptides
/ chemistry
Pneumonia, Viral
/ epidemiology
Protein Binding
Severe acute respiratory syndrome-related coronavirus
/ genetics
SARS-CoV-2
Severe Acute Respiratory Syndrome
/ epidemiology
Viral Proteins
/ chemistry
COVID-19
HIV
HLA population genetics
Indigenous Americans
SARS-CoV-2
coronavirus
influenza
natural selection
peptide-binding predictions
Journal
HLA
ISSN: 2059-2310
Titre abrégé: HLA
Pays: England
ID NLM: 101675570
Informations de publication
Date de publication:
09 2020
09 2020
Historique:
received:
15
05
2020
revised:
19
05
2020
accepted:
26
05
2020
pubmed:
1
6
2020
medline:
2
9
2020
entrez:
1
6
2020
Statut:
ppublish
Résumé
We report detailed peptide-binding affinities between 438 HLA Class I and Class II proteins and complete proteomes of seven pandemic human viruses, including coronaviruses, influenza viruses and HIV-1. We contrast these affinities with HLA allele frequencies across hundreds of human populations worldwide. Statistical modelling shows that peptide-binding affinities classified into four distinct categories depend on the HLA locus but that the type of virus is only a weak predictor, except in the case of HIV-1. Among the strong HLA binders (IC
Identifiants
pubmed: 32475052
doi: 10.1111/tan.13956
pmc: PMC7300650
doi:
Substances chimiques
HLA Antigens
0
Peptides
0
Viral Proteins
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
277-298Subventions
Organisme : Australian Government Research Training Program Stipend (RTPS)
Pays : International
Organisme : Australian Research Council Discovery Indigenous Project
ID : IN180100017
Pays : International
Organisme : Australian Research Council Future Fellowship
ID : FT170100448
Pays : International
Organisme : European Cooperation in Science and Technology
ID : BM0803
Pays : International
Organisme : Max-Planck-Gesellschaft
Pays : International
Organisme : Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
ID : 310030_188820
Pays : International
Organisme : Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
ID : 31003A_144180
Pays : International
Informations de copyright
© 2020 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.
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